RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0545

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

25232250

End:

25234555

Strand:

-

Ref_name:

OSA-LNCN0545

Sequence
(OSA-LNCN0545.1):

CGCUGUGCGUGGCUGCCGCCGGGCAUGAGGGCGGGUUCGCUCGUUUGCCGAUGGCAUCGUCAUGGCUUGUGUCACUCGCUCACGCGCACCUAUUCGGAUUUCAGAGACAUGCGAAUCGCGAUUUCUCAACAAUGAAGAUGGCUCAGGAGUCGGGGGUUCGCUGCUGAUAAUCCUAGGGAAGCUUUAGUUAAACUUGAACUGCUAUCAGGUUCUCCAUUGUGUCAAGAUUCUACAUGGAGAAGGUCAUGUACCCUGCAUCAACAUGAUGAUGUCUAGGGCUCUAGCUUUUCAUUGUGAUCUUGAGAUUCACUGCUCCAGUUUAUCCAUGUGAGAAAUCGGAACAGUACGCAGGUUGAAGAUGGAUUUCCUUAGGAUCACCAAUUCCUAAAGAACUGGCACAUCUUAAGUACUGAAAACCCAGUACUGGCUUGGCUACCGUUAAGUGACUUCCUACUUCUGCCUGAUAAGCUAACAUUUUCUGGAACUUACACUUUGACUACUUGUUUGAGCACUAAGAAAAUCAGCAUCUAAGUUAUUAAUAUUAUUCAUGUUAAGAAAAAGCAUGAAGGUCCAAAAAAAGGAUUGGCAUAAUUCUGUCCAUGACUUGCAAAAAGAACAGCUUUCUUAGAAGUCCAAAAGGAGUCCUGUUGCUAAAAAACAGAGAUUUUUUAAGUUCUUACAGGAGUCGAAUAUUG

Sequence
(OSA-LNCN0545.2):

CGCUGUGCGUGGCUGCCGCCGGGCAUGAGGGCGGGUUCGCUCGUUUGCCGAUGGCAUCGUCAUGGCUUGUGUCACUCGCUCACGCGCACCUAUUCGGAUUUCAGAGACAUGCGAAUCGCGAUUUCUCAACAAUGAAGAUGGCUCAGGAGUCGGGGGUUCGCUGCUGAUAAUCCUAGGGAAGCUUUAGUUAAACUUGAACUGCUAUCAGGUGCUUUAAGCAAUGGUCAACAUAUAUUGGAAAGUACACCACAGUAGCUGCUCUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

93

LEP:

18.9%

ME_num:

377

MEP:

76.63%

HE_num:

21

HEP:

4.27%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.64

Avg Expression:

3.70

Tip: OSA-LNCN0545 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.297640082526550.000172057634629506
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min"-2.675055518229230.0265779310659156
3Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-1.338711597170260.0462770586090944