Chr:
Chr1
Start:
25260789
End:
25261689
Strand:
-
Ref_name:
OSA-LNCN0543
Sequence
(OSA-LNCN0543.1):
AUGAACUAAACACACCCUAUAUGAAGUAACCUAACUUUUGUAAUAGAGAGGAAAGAUCCAUUAAUGGCCCAAUUCAAUGCUCCUUCUGUACAUUUACAACAAUAGGUGUCUUUUUCGUAGUACUUUUUUUUUCUGGACUUAAAUAUAAGGCAUGCAUGUAUUUAGAAAGUCAAGGUUUGUAAUUUUUUUUACUAACAAUUAAAUACUCAACAUAUAUGUUUUAUGUCAUAUAAGUGGUAUCGAUGCAUUCGUAUCUGAAAGUACUUUCAUACACCCUCAGUUAAGUUCCUAUCUAAUCUCAUCAUAUAAGUUUUUUCAUCGAGAAGAAAGACUUAACUUUUGUGUAUUUCAUUUAAUGUUAUUAUGUGAUAAGUAAGGAUCAAUAAACAUGUAGACUCAAUUUGCAUGCACAUAUACAAUAAUACUGCAUGUUAAAUGAAGGGAUCAAAGUUAUAUGACGAUCAAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
82.93%
ME_num:
MEP:
16.67%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
1.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.6993867331193 | 0.00714388990171404 |