RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0536

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

24974228

End:

24976411

Strand:

.

Ref_name:

OSA-LNCN0536

Sequence
(OSA-LNCN0536.1):

GGUUUUUUUUCUUCUGAAAACUCAUGUAUUUAUUCGAUAUAGGAGUUCUCACAUGCAAACAGAUUACAUGUGCCAUUUGGACAUCUCUCAGAAAAAGAGAGAUUGAGUUGCUAGCUCUCAGUAGAACAAGCAGCUGGUAGAAGUACAACACAACAUGCAAAAGGAUCCUUGAAAAAGGACAAGUUAUACAAAGGUCCUUGAAAUAUGUAAAGAAGGACACGAAAAGAAAAUAGAAAAGCAUUCCAGUCCUUGCUUCGCUUUUUCUCCCUCACCGGUGACCUAGAUGAUGAAGCCGACAACGGCUAUGGUGAAAACAAGGUUGACUGCAAAAGAUGACAUCCAGCCACAAACCCAACAGGGGCCUCGUAAAGUAGAGGUUGAAAUGAACUCGACACUACUGCAGGAUAGAUUUUUGUGGACGCCGCCCCCUUUUAUUUCCAUGCGAUCUGUAAGUGGAACCGCACGGGAAAAUAGGAAGACCGGCGCCAAGCCGUCGCCCGCACGGGAAAACGAAUUAUCCCGUGUGGGCGGCUUAAGCCAACCGCACGCGAAAAUAGAAUUAUUUUCCCAUGCGGAUCCUUAAGAGGCCCACACAGGAAAAUCGAUUUUCGCAUGUGGGCCUCUUAAAGGCCUGUCUAUAAGUCUAUCAUUCCUCCCCUUAUCCCUCCUCGAUACUUCAAAAUUUCAUCCUUAUCCACCACUCUUCCUUAUCUUCAAAAUAUCUCUCCUCUCUCACUCUCACCUCUCCUUCACAUCCUUAUCUCCUCGCCUCGGGAUUGCAUCCUCACAUCCUCACCUCGGUUGGCGCACUGAUCAACUGCAUCGGGACGAUGACGACGAGGAGGCGGCCAGCUUCCUCGCCCUCCGGCGGCGGCUCCCUUGCCCUCCAGCCGGGAGCUACGACGACGAGGAGGAGGCGACCGGCUCCCUCGCCCUCCGGCCGGGAGCUACAAUGAUGACGAGGAGGCGGCCGGGAGCGGCGCAGCCGGCCGAAUCAACGCCGCCCCUGUAGCCGACGACGACGAGGAGGCGGUGGCCUCGAGCGAGCGAGCGAGCGGCGGGUGGCGCAGUUCCCUCAAUCUCUGGCCUCGAGCGACGACAACGAGGAGGAGGCGGUCGGGAGCGGCGCCGCCGGCCUGAUCAGGCCGCCGACGAGGAGGCGCCUGUCGCGGCUGCUGGUGGAGGCAGCGCGGUGGCCGCCGCCGACGUCGAGGAGGAGGAGGCGACAGUCGGGAGCGGCGCCGCUGCCGAUGACGACGAGGAGGAGGCGGCCGGGAGCGGCGCCACCGUCCCCACCUCAUGCGGCCGCCGACGAUGAUGAUGAGGAGGCUGCUAGGAGCGGCACCGCCCUUCCCACGCCAGGAUCCGGCGGUGGCGGCUGCCCUCCGGCUAGAUCUAGCGGCGGCAGCAGGGAGCGGUGGAUCUAGGGUUAGGGUUUCGGUAAUUUGUGAAUUUUAUUUUUUUUUCAGGUUUUUAUUUUUCGUGCGGGCGACAUAAGCACCCGCACGGAAAAAUCCAAUUUUCGCGUGCGGGGGCGCCUCCCGCACUCAAAAAUCACGAUUUUCGCAGACGAGUAGUUGCGUGCGGGCCAUUCAUUCGCAUGCGAAAAUAUUUUUUGACUGCACGGAAAAACCCUUCCUGUAGUAGUGCGAUGAACAAGAGAAGUUUCAGUCAAACCUUGGAGAUACCCCAUCGAAGACAAGGAAGGACACCAGACCAGCAGCGACAACCUCACUGGAGAUGAUUUGAAAGACCAGCACCACCUCAUCGUUGUGGAGGAAGAAGUGUUCCCACCACAGGGAAUAUCUGUUGCACUUGUGGAUCUAACACCAACAGAAACCUCCAUAGCAACCCUCUGAACCGCAUGAAGCUGAGAAAUCCCGGAUUGAACUCAAGCUGAGCAUGGAAGGGAGCAUCUGGGAUGAAGAAGAUGGGUGUUGACAUCGCCUUCGAGCUGUACACAAAAGAGGAAGAAGAAAACCUAGAACGAGAUAAACUCGAUACAUAACGGGAUAAAUCUGACCACGGGAUGAACACAAUAGCUCCCUGAACCCCCACCCCCCCCCCCCACGCGUCAACGGCGACUAGCUGCCACCACAAGCGUAGGGGAGAGGGGUUUCAGCGAAGUGGAAAGGAGGAGUCUGGCUGUUCACUUUUUACCGCCAACGGGAGAGAAAGGAUAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

472

LEP:

95.93%

ME_num:

14

MEP:

2.85%

HE_num:

5

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.94

Avg Expression:

1.40

Tip: OSA-LNCN0536 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h10.05043385536235.17384104588805e-08
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h9.904000903188251.71178088186166e-11