RiceNCexp:Browse

OSA-LNCN0534

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr1

Start:

24714903

End:

24717600

Strand:

Ref_name:

OSA-LNCN0534

Sequence
(OSA-LNCN0534.1):

UGAGAAAUGGGAUAAUUUAGUUGUGGUGAUCAUACCACCUUGCUGGCCAUGAAUUAUAGCAUGGAUUAGUCAUCACUAAGAGAGGGACACAUAUGCGCAAUAGAAAUCACCAUGGAAGUUAUAGCACUUUAUUCACAAUUUACCGGUACAGUUUUGCAACCAUCCAUACAUACAUGCAUAUAGUUAUAUAUUUAGAAUCUUAUACAGUAUGCAUUUCAUAUAUUGUACGAAUACAUUAGCUCAGAACAUAUCAUGUAAUUAGUAAUAUUUCAAAAAGGGACCCUGCGUUAUAGAACAAACUAUAAACCAGUCCCUAAACUAAGGGUAAUCUCCAAAUUUCUAAGACUUAAAAGGGACCCGAAUGCAUAUAUACUAAAUAUCCUAUAUCUCACAAAAUCUCCAUCUGUUAGAAAUGAGUGAGGAGCCUCAAAAUUAUUCCACCGAACAUGCCUGGUGAGGUGUCAACCCCAGCUGCAGCCAACAGAGUUCUAGUAGGUGAGUCACUAGCCAAGAUUAAUUAAGUGGUAUAUGUUCCUUUGAAAUAAAGCUACUGCCAUAGGAGUCAUUACUAGCUACAGCCAUCGAACGAGCUAGUUUAGGAAAAUGCCGAGUGAUCCCAAAGCAAGAAGAGAGCAAGGCCUCCAACACUGGCUAUCUCUGCUUGGAGGAAUUACCAAAACAUUAGCAAUAGCAGUCACCACCAGCAGUUGGCUGGGGAUCCAGCUCAAGUCAGAGAGAAAUAAUCGUAGCAGUAAGUUCAGCACCACAACUACACCCCAUUUCAAUGAUAGCAGCCAUGGAGAAGCAAUCAAAAAGGCCAGAGAAUAGGAGGAGAAGCAGUGAUUGUUUGAGAUUUAGAAGGAGCAAGAAACUCAGAUCAAGAAGCAAGAUGGAGCAAAAAUCAAGCAAGGGGAUCAGCUUCAAGAGAGCUCAAGAAAAAUGGCAGGAAGCAGUCAUGCAAUAUGAGUAGAGCAAGAGCCAAGAAGAAGUACCUGAGUUUCAAGUAAAGCAAGGGGCUUUAGUUCCAGGAUUAGCAUGUCAUAGUACAAACCCAUCAGGAGGUGUCUGAGUUUAAAGUGGAGAAACUAAAAUUCCAUCAGGAGAAUCCUUGAAACUAAGUCUAUAGGAGCAGUUGCAGAACCAGAGUAGAUAACCAUAUAUCAGCCACUCUAAAAUCAUGGCAGGUAAUCAGGAGAUUAAAAUGAAAUUGAAAUCAUAUCAUGGCAUGAUUCUUGUGUGAUCAUAUACUAGUAUGUGUAGGAGUUGUGUAUUGCAUUCUCAUCCAUUAGAAUAUGAACAAGAGCAUAUCUGAAUCAGUAAAAGGACCAUAUAAUAAUUUCAGCUGUAGAACAUGUGUAACCAUUAGGGUAUAAAUAUUUUAAUUUAGCUGACAAGUAGAAAGAUUAGUUAUAGUUUUGUAUCAUCAUGUUGCUAGCAGCAAGAAAUAUUUUAUAUUGCUUAGAAGUAUGGUAAUUGUGCUGUUGGGCUUAAAAACUAGAUAUAUAACUAGUUAUGUGGGGUAAGGUUCAGUAAAGACCAUAAGAAUCUUGAUUUGAUAAAUAGUUGAUUAGAGAUAGUAAUAACUUACUGGAUUUAACCUCCAGAAUUUAGUAAAAGUCCAGAUGGCAGAUUGAUGUGCAUAUACAGAUAUAGAAGUCCAGAUGGCACCAGUAGUUCAGAUUAAUGUGCAUAUACAGAUAUAGAAGAUGAGUACUGUGUUCCAGAAAAAAGAAUCAAAUUAGGGUGAUAAGUUUAAUGAGUAGAAAACCAUAGACUUCUAUAGUAGAUAGUCUAUAGCAACUGUUUAGAUUUAGAGCAUAGCAUCUGGAUAAGUUGCAUAUAUAUAAUUAUAGCUGAUUAGUUCAAUUAUUGGCCUCAUGAACCAUUCUAAUCAAGUAUGACGUAAAUUGUGUUAUUUGCUCUGUAAAACAUACAUUGAUGUCAGGACAUAUAGACAGUAGUAGUAAAUCAUCGAAAGAAAUCAGUCACCAUCUCUUUGUAUUCAAUGCCAGAUUUCAUAGGUUAUAAUUCAACUAUAUAUAUGCUGUGUUUAGAUCUAGUGAUGAAAAGUUUUGGCGUGUCACAUUGGAUAUAUAAACACACAUUUGAAUUAUUAAACGUAGACUAAUAACAAAACAAAUUACAGAUUCCGCCUGUAAACUGCGACACGAAUUUAUUAAGCCUAAUUAAUCUGUCAUUAGUAAAUAUUUACUGUAGCACCACAUUGUCGAACCAUGGAGCAAUUAGGUUUAAAAGAUUCGUCUCGCAAUUUACACGCAAUCUAUGUAAUUAGUUUUUCUUUUUGUCUAUAUUUAAUACUCUAUGCAUGUGUCCAAACAUUCGAUAUGACAGGAUGAAAAGUUUUUGCGUGGGAACUAAACAGGGCCAUAGUACAGGUCUUGCCAAAUUAUCAAAUUGUAGAAGAUGUAAAUUGCUGCAUCAUUCAAUAAAAUAUAUUUGUUGGAUUGCUAUAGUUGGACUUGUUGAGUACCAUUUGUACUCAUCCAUAUAUAUAUUAUUCCUUGUAGUGUUGAGCUAACAAUUAGGUGAAGAAAGGUUCUACAUGAUUGAUCAAGAUCAAAGCAAAGAAUCGUUCCAUAUCUCUACAUCAACUGAGAGUUGAAGGUCACGAAGAUCUAGAAUAGCAAGAUACUGUUAGUGAUUAUUUUGUCAAAGCUAAUUUCUUUGGCUUUUAUUU

Sequence
(OSA-LNCN0534.2):

CAACCAUCCAUACAUACAUGCAUAUAGUUAUAUAUUUAGAAUCUUAUACAGUAUGCAUUUCAUAUAUUGUACGAAUACAUUAGCUCAGAACAUAUCAUGUAAUUAGUAAUAUUUCAAAAAGGGACCCUGCGUUAUAGAACAAACUAUAAACCAGUCCCUAAACUAAGGGUAAUCUCCAAAUUUCUAAGACUUAAAAGGGACCCGAAUGCAUAUAUACUAAAUAUCCUAUAUCUCACAAAAUCUCCAUCUGUUAGAAAUGAGUGAGGAGCCUCAAAAUUAUUCCACCGAACAUGCCUGGUGAGGUGUCAACCCCAGCUGCAGCCAACAGAGUUCUAGUAGGUGAGUCACUAGCCAAGAUUAAUUAAGUGGUAUAUGUUCCUUUGAAAUAAAGCUACUGCCAUAGGAGUCAUUACUAGCUACAGCCAUCGAACGAGCUAGUUUAGGAAAAUGCCGAGUGAUCCCAAAGCAAGAAGAGAGCAAGGCCUCCAACACUGGCUAUCUCUGCUUGGAGGAAUUACCAAAACAUUAGCAAUAGCAGUCACCACCAGCAGUUGGCUGGGGAUCCAGCUCAAGUCAGAGAGAAAUAAUCGUAGCAGUAAGUUCAGCACCACAACUACACCCCAUUUCAAUGAUAGCAGCCAUGGAGAAGCAAUCAAAAAGGCCAGAGAAUAGGAGGAGAAGCAGUGAUUGUUUGAGAUUUAGAAGGAGCAAGAAACUCAGAUCAAGAAGCAAGAUGGAGCAAAAAUCAAGCAAGGGGAUCAGCUUCAAGAGAGCUCAAGAAAAAUGGCAGGAAGCAGUCAUGCAAUAUGAGUAGAGCAAGAGCCAAGAAGAAGUACCUGAGUUUCAAGUAAAGCAAGGGGCUUUAGUUCCAGGAUUAGCAUGUCAUAGUACAAACCCAUCAGGAGGUGUCUGAGUUUAAAGUGGAGAAACUAAAAUUCCAUCAGGAGAAUCCUUGAAACUAAGUCUAUAGGAGCAGUUGCAGAACCAGAGUAGAUAACCAUAUAUCAGCCACUCUAAAAUCAUGGCAGUGUUGAGCUAACAAUUAGGUGAAGAAAGGUUCUACAUGAUUGAUCAAGAUCAAAGCAAAGAAUCGUUCCAUAUCUCUACAUCAACUGAGAGUUGAAGGUCACGAAGAUCUAGAAUAGCAAGAUACUGUUAGUGAUUAUUUUGUCAAAGCUAAUUUCUUUGGCUUUUAUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

398

LEP:

80.89%

ME_num:

MEP:

18.9%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

root

Tau :

0.77

Avg Expression:

0.66

Tip: OSA-LNCN0534 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-3.18992011205306	0.00434886345929246
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-4.29284920414254	0.00137623413331095
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-4.45636774071747	0.000976054200079841
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-2.37414278593947	0.0273773677573634
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-3.82573184045647	0.0071640199742699
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-3.56219778921532	0.000693101687901088
7	Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"	-1.78470061785462	0.00365982466774563
8	Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"	-1.85150842512973	0.00116966238170629
9	Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days"	-3.88826139976606	5.36564038913424e-08
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-2.81229827528417	0.007811768793118
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-3.72881162524877	0.000310210577834613
12	Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1	3.52552703035768	0.0355027680703421
13	Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae	-2.43356907939465	0.00448856493722495
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-3.16049198260716	0.00440188000263063
15	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-3.28330636344961	0.000494460509527739