Chr:
Chr1
Start:
24256073
End:
24258554
Strand:
-
Ref_name:
OSA-LNCN0525
Sequence
(OSA-LNCN0525.1):
UUCUUCAUUACUCUCCUGUCUCCUCUGCAUCUGUAUCUCAACAAAAAGAAAUCCAGGUUCUCAUCGGCAAUAAUUUUCUCACUACCAUAUUCUACGUCUUAGAAUUGAAAAAAAAAAUAAUUUUCAGUUGCACUUCCAUUGCACGCUGCUAAACCAGAGUCUCUGUCAUCAUGGCUUGCCUCCUGACUCCUACAUUUGGGAUGUGGAGCGUGGCAGGUGAUCAGGAUUGGGCAUGAUGCAGGUGGCUACUACUUUGUACACAGAAGAGAUUGAGUAACUGAUAGGAUAUAAACUGGGCUGGAUUGAUUGAAGCGGUGGACUGGUAUUGCUAGCUGAAGGGCAUAAAACAAAGUUCUAAGAGUUGAGUAGUUAGAUUUUGACUCCGCGGAAAGCCAACAGGGGGUAAAAUGGGUUCAGUUCAAAAUAAGAAUUGUGGACAAGUAACAUAGAAACCUGUUUCCAACAGGAAAAGCAAACAGCAAUGGGGAAAAUGAAUGACAGGUAAAUUCAAAUAAGUAACAGUACGAUGUGUCACAAGGAUAUAAGGGAGUGUAACACAGAAGGGAGCAAACUAGGGGAAACUGGACGAGUCCCUCAAACAGACAUUUGUUUAUUGUACAAAUACAUGAAGGUGUAUAAAUAUGCUCAUUUACAAAUAUUUGAUGACCUCUUUACAGAUGAAAUACAGAUUUCGGAUUAAAAACGCAACUUGAUAUUUAAUGAUCACAUCACUGUCUAUAAAUUGACCAAGCUUGUGUGGUCUGCUGUGAUAAUACUAGGCAUUGAGAAAUCAGAAUUAGAGAAAAAAAACAUGCUGUGAUAAUAAUAGGCAUUCAGAAAUCAGAAUUCAAGAAAAAAAACAUACAUAGUACUAAUGUUAAAAGACUUGGCUACAGGAAGAGGAAAAUCAUCCAAAGAACAGGUGGGUGUGGUGAGGGCACAGCAGCGGAUGUAUGCUGGUUCUUGUUGAGCCACUUCACACAUUAGUGUGUCGUUAUUUUUUUCUGGUAUACAUCAAGAGGUAAGCGAAACACCUUUGCAGGAACAGAAGGGCACAGUUCACCACCUAGUGGUUACCCUAAUAAAUUUGGCACGAACACUAAUGUUCUUGGGAUAGUAAAAAAAAAUUUAAAAAAAAGAUCUCACCACUCUUAGAACAGAAUAGUCAAUCAGAUGAUUUGCAGUUAGGUGAUGUACAAAGACAUUCUACAACAGGUCACCAAAUACCCCUGCUUCAAAAACAGGUUUUCAUAGUUCCUAUUCAAUCUGAGACAUAGAUUGCCAACUUAACAAAAAAUCUAAGUAUCAGGACUAAAAGUCCUUGCAUUGCAUAGCUCAAGCAUUUAACCACAGUAAGUUUGUAGUCCACUACCAUAUCACAAAUGCAACAACAAAAUGAAGUUAACAUACUCUCACCGCCAAACAAUACUUAUAAACAGUUCCCAGUUACAGGUACCGGUUUGCUAGAUAGCUAUAGAAAAACAGAUUAAUGCAACAUUCCCAAGAUAAUGUUCACCAUUCAGUCUCUAAUUUCGACUUCGACAAUUGUUUCAACACAAAAAAAAUGCAUAUUAAACUUGAUAUUUCUCAGCAACUAAUGUUUAUUUAGGUGUUCCAGCUAGUCAAAAGAAUGUAACUUAAUGGCAUAUCCAAAAAACAGUUUCAAUGAAGAAAAGGCACCCCACCAAUAUGCAUAUUAAUCAAUAGGAUUGGGUCAGCCAUAUUAGUUUAUAUGAAAGGAGCGCUGCGUUUCUGAUCAAAUAAGAUAGCACACACUGUGUAAACAUUAUUGUGUAUCCUGCACCAACUACUCAUAGAAGUUUAAAGAAAGCAUCCCUACAAUAUAUGACAAGAACUUAUCAUAAGUAGCAUUAGUCAUAACAUCGCAAACUGCCAACGGGGGAAGAAUAGUUUGCACCAAUAUAUUAACUAGUAACAAUCAUUUGCUCAAUAAUGUGGAACAACUAUUGAUGCUUUAGUAGACAGGCAAAGGCAAUGAACAUGGAGAUCAAACACAUUGCCCGUCAUAGAGUGAACAAGUUUUACAACAAUGGUGCAUUGAAGAAUAGCACACGAAAACAAUUCCCGAAACGCAUUAGUGUAUAGAACCAGGCAAUAUAGCAUGACUACUGGCAAAAAAUGCAGUUUCUCCCUCCCAGCACAACGCGAAUCAAGUCGAAGGUAAUCUAGCAAAGCAUUCGCAAUUCAUAGUUUCAUUAAAUUCAGCUCUAAUAAACCUAAAGCUAAGGAA
Sequence
(OSA-LNCN0525.2):
GUGAUGUACAAAGACAUUCUACAACAGGUCACCAAAUACCCCUGCUUCAAAAACAGGUUUUCAUAGUUCCUAUUCAAUCUGAGACAUAGAUUGCCAACUUAACAAAAAAUCUAAGUAUCAGGACUAAAAGUCCUUGCAUUGCAUAGCUCAAGCAUUUAACCACAGUAAGUUUGUAGUCCACUACCAUAUCACAAAUGCAACAACAAAAUGAAGUUAACAUACUCUCACCGCCAAACAAUACUUAUAAACAGUUCCCAGUUACAGGUACCGGUUUGCUAGAUAGCUAUAGAAAAACAGAUUAAUGCAACAUUCCCAAGAUAAUGUUCACCAUUCAGUCUCUAAUUUCGACUUCGACAAUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.63%
ME_num:
MEP:
76.83%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.77
Avg Expression:
5.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.34530192091599 | 7.9888497308828e-09 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.12928992431617 | 1.74988028570825e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.13642985763952 | 1.05537884478859e-07 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.24689616779565 | 1.03736698528294e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.17614586930462 | 3.35830359235781e-07 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.09370502852148 | 6.50345404309971e-08 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.21481520707527 | 1.38446728513928e-08 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.09256486397956 | 1.23640781429213e-07 |
9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.51555253428229 | 7.62273263594227e-17 |
10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.72143449127467 | 0.00666058670562736 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.39182928707087 | 1.05178548828226e-10 |
12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.17773080607276 | 3.64832765942002e-10 |