OSA-LNCN0525


Function Link


Basic Info

Chr:

Chr1

Start:

24256073

End:

24258554

Strand:

-

Ref_name:

OSA-LNCN0525

Sequence
(OSA-LNCN0525.1):

UUCUUCAUUACUCUCCUGUCUCCUCUGCAUCUGUAUCUCAACAAAAAGAAAUCCAGGUUCUCAUCGGCAAUAAUUUUCUCACUACCAUAUUCUACGUCUUAGAAUUGAAAAAAAAAAUAAUUUUCAGUUGCACUUCCAUUGCACGCUGCUAAACCAGAGUCUCUGUCAUCAUGGCUUGCCUCCUGACUCCUACAUUUGGGAUGUGGAGCGUGGCAGGUGAUCAGGAUUGGGCAUGAUGCAGGUGGCUACUACUUUGUACACAGAAGAGAUUGAGUAACUGAUAGGAUAUAAACUGGGCUGGAUUGAUUGAAGCGGUGGACUGGUAUUGCUAGCUGAAGGGCAUAAAACAAAGUUCUAAGAGUUGAGUAGUUAGAUUUUGACUCCGCGGAAAGCCAACAGGGGGUAAAAUGGGUUCAGUUCAAAAUAAGAAUUGUGGACAAGUAACAUAGAAACCUGUUUCCAACAGGAAAAGCAAACAGCAAUGGGGAAAAUGAAUGACAGGUAAAUUCAAAUAAGUAACAGUACGAUGUGUCACAAGGAUAUAAGGGAGUGUAACACAGAAGGGAGCAAACUAGGGGAAACUGGACGAGUCCCUCAAACAGACAUUUGUUUAUUGUACAAAUACAUGAAGGUGUAUAAAUAUGCUCAUUUACAAAUAUUUGAUGACCUCUUUACAGAUGAAAUACAGAUUUCGGAUUAAAAACGCAACUUGAUAUUUAAUGAUCACAUCACUGUCUAUAAAUUGACCAAGCUUGUGUGGUCUGCUGUGAUAAUACUAGGCAUUGAGAAAUCAGAAUUAGAGAAAAAAAACAUGCUGUGAUAAUAAUAGGCAUUCAGAAAUCAGAAUUCAAGAAAAAAAACAUACAUAGUACUAAUGUUAAAAGACUUGGCUACAGGAAGAGGAAAAUCAUCCAAAGAACAGGUGGGUGUGGUGAGGGCACAGCAGCGGAUGUAUGCUGGUUCUUGUUGAGCCACUUCACACAUUAGUGUGUCGUUAUUUUUUUCUGGUAUACAUCAAGAGGUAAGCGAAACACCUUUGCAGGAACAGAAGGGCACAGUUCACCACCUAGUGGUUACCCUAAUAAAUUUGGCACGAACACUAAUGUUCUUGGGAUAGUAAAAAAAAAUUUAAAAAAAAGAUCUCACCACUCUUAGAACAGAAUAGUCAAUCAGAUGAUUUGCAGUUAGGUGAUGUACAAAGACAUUCUACAACAGGUCACCAAAUACCCCUGCUUCAAAAACAGGUUUUCAUAGUUCCUAUUCAAUCUGAGACAUAGAUUGCCAACUUAACAAAAAAUCUAAGUAUCAGGACUAAAAGUCCUUGCAUUGCAUAGCUCAAGCAUUUAACCACAGUAAGUUUGUAGUCCACUACCAUAUCACAAAUGCAACAACAAAAUGAAGUUAACAUACUCUCACCGCCAAACAAUACUUAUAAACAGUUCCCAGUUACAGGUACCGGUUUGCUAGAUAGCUAUAGAAAAACAGAUUAAUGCAACAUUCCCAAGAUAAUGUUCACCAUUCAGUCUCUAAUUUCGACUUCGACAAUUGUUUCAACACAAAAAAAAUGCAUAUUAAACUUGAUAUUUCUCAGCAACUAAUGUUUAUUUAGGUGUUCCAGCUAGUCAAAAGAAUGUAACUUAAUGGCAUAUCCAAAAAACAGUUUCAAUGAAGAAAAGGCACCCCACCAAUAUGCAUAUUAAUCAAUAGGAUUGGGUCAGCCAUAUUAGUUUAUAUGAAAGGAGCGCUGCGUUUCUGAUCAAAUAAGAUAGCACACACUGUGUAAACAUUAUUGUGUAUCCUGCACCAACUACUCAUAGAAGUUUAAAGAAAGCAUCCCUACAAUAUAUGACAAGAACUUAUCAUAAGUAGCAUUAGUCAUAACAUCGCAAACUGCCAACGGGGGAAGAAUAGUUUGCACCAAUAUAUUAACUAGUAACAAUCAUUUGCUCAAUAAUGUGGAACAACUAUUGAUGCUUUAGUAGACAGGCAAAGGCAAUGAACAUGGAGAUCAAACACAUUGCCCGUCAUAGAGUGAACAAGUUUUACAACAAUGGUGCAUUGAAGAAUAGCACACGAAAACAAUUCCCGAAACGCAUUAGUGUAUAGAACCAGGCAAUAUAGCAUGACUACUGGCAAAAAAUGCAGUUUCUCCCUCCCAGCACAACGCGAAUCAAGUCGAAGGUAAUCUAGCAAAGCAUUCGCAAUUCAUAGUUUCAUUAAAUUCAGCUCUAAUAAACCUAAAGCUAAGGAA

Sequence
(OSA-LNCN0525.2):

GUGAUGUACAAAGACAUUCUACAACAGGUCACCAAAUACCCCUGCUUCAAAAACAGGUUUUCAUAGUUCCUAUUCAAUCUGAGACAUAGAUUGCCAACUUAACAAAAAAUCUAAGUAUCAGGACUAAAAGUCCUUGCAUUGCAUAGCUCAAGCAUUUAACCACAGUAAGUUUGUAGUCCACUACCAUAUCACAAAUGCAACAACAAAAUGAAGUUAACAUACUCUCACCGCCAAACAAUACUUAUAAACAGUUCCCAGUUACAGGUACCGGUUUGCUAGAUAGCUAUAGAAAAACAGAUUAAUGCAACAUUCCCAAGAUAAUGUUCACCAUUCAGUCUCUAAUUUCGACUUCGACAAUUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

72

LEP:

14.63%

ME_num:

378

MEP:

76.83%

HE_num:

41

HEP:

8.33%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.77

Avg Expression:

5.76

Tip: OSA-LNCN0525 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.345301920915997.9888497308828e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.129289924316171.74988028570825e-07
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.136429857639521.05537884478859e-07
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.246896167795651.03736698528294e-05
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.176145869304623.35830359235781e-07
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA1.093705028521486.50345404309971e-08
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.214815207075271.38446728513928e-08
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.092564863979561.23640781429213e-07
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.515552534282297.62273263594227e-17
10Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"1.721434491274670.00666058670562736
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.391829287070871.05178548828226e-10
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.177730806072763.64832765942002e-10