Chr:
Chr1
Start:
23926066
End:
23929134
Strand:
-
Ref_name:
OSA-LNCN0523
Sequence
(OSA-LNCN0523.1):
CUUCCUGGUGAGUGCGAAUCUCCCUAAACUAAUAUCUUCUUUUGCCUGUCAGCAUGGUGCUGCUCUUUAAACUAUUGAUAGCCGCCACGAACAGAAAUAAGUUAGAGCAAGUUUAAUAGUACCGCCAUCAACUGGUGAUAAAAAUGUACAUGUCAUCCGGAGGUAGAAAAUAAAGAUGAUACGUACAAUAGCAGGCUGCUAAUCUACCUACACACUUCUCUAGGUAGUUAACUUUUUCUAUUUUUUAAUCUAACUUGCUACUCUCUAUCCUAUCCCGUGUGUUCUGCUAAUGGGGCCAUAGCUAUGCUAUUGGAGAAAAACAACCACAAUAUUGAUUUUGCAUUGGUUCCUAUAAUAUGCAUAGUUUCUUAAAUGUAAAAGAACCUUUUAUAUUCUUAUCUACGACAUGACUCACCAGCUAGAUCUUCACCGUGUUUAGUUCUAAAAUAAUUCUUCAAACUUCCAACUUUUUCAUCACAUCAAAACUUUCGUACACACACAAACCUCUAACUUUUCCGUCACAUCAUUUAAAUUUCAACCAAACUUUUAAUUUUAGUGUAAACUAAACACACCCCUUUUUUGGGUGCUGCAAAGGAUCAGGUUACGGUCAAUUCAGAUUAUCAGAGGAGUACUAGCGUACGGGUUGGCAGGAUAUGGAUUGUUUUUCAGUCAACCACGAGACAAAGAGGCAAUUUCUUUUUUUUCUGCCAUCCUACUAUUGUGGAUAUUUUCCUCGUAAGAAGGAUUUGUACAGAUUCAUAAUAUUAGAUUAAUAUUAGAUUCAUAGUAUUAGGAUAUAACAUACUCAAUACUAGAUUCUUUAAUUUUAAGAUGGAUAGAGUAUAUAUCUUGGAAAUAAAAUCGAAAACGAUGAAACCGAAAAUAAAAACAGUAUCAGAAAUAUCAUAAAAACGAAAUUAUAUAGACAUAAACAUAUUGAUGUCGAACGGAAACAUUGAAGUAUAAAAUAGAAAUACGAUAAUUACCACAAUAUAGAAAAAAAUAAUUUCCGUAAGGACAUGGUAAAAUUCAGAAAUGAUCGAUACGCGGCAAAGCAAAUCGUUUUCGUUUCCAUUUCUAUGUUUCUUUUUUUAUUUUAUUUUUUUUUGUCUGUAACCAUUUUAAGGGGGUGUUUGGGAACUAGGGACUAAAUUUAGUCCCUCUCACAAAAGUAUAAGUCCCUAUGGUAAGAACUUAUAUUUUUGUGAGAGGGACUAAAGUUUAGCACCACUUUAAUCCCUCCAACCAAACACCGCCUAACAUAGCUCGGUCAGUAACAACCGGAAAUUAGUGUGGUUGGGAGUAGUAUCUGACAAGAAAAUGUUGUUUGAAUUUAACCAUUCCUUGAAAUUAAUGAUUUCAGACUCAUAGGAAAGAUGCAGAGCCUAUAUUAUGCACCUAAGAAACAGACUUUGAAGAUGACUGAGAGAAUGAAAGGUUGGAAUAGACAGACAUGUAUACAUCUUAAAUUGUCAACGGUUCCCCUUAGAGCAAGUUUAAUAGUAUAGCCAACUACUAGCUCCAAUUUAUCUAUAGCCAUUCUAAUAGCUCAUUCAUACAAUAGCUACAUACUACACUAUUAAUACAUGGUCCCACCUGUCAUACGCAUACUGCGUCUUAGAGUCCGUGCUACAGCUGGCUAUAAAUCUGUAGUCCGUUGCUCUUCUCUCUCCUCAUUUAAUUUUUUAAAAUAUAUUUACAGCUAUCUUAUAGCAUGUUAUUGAUUGUACCUGCUCUUAUAUUGCCGGAUCGUGUCUACGGGAUGUCGGGAUUCGAAGUCGGCACACAACACGAAAUUAACAACCGAGCAUAUAUAGCCUGGCACGCCAUUUCCUCUCUUUGCUUUGUCCUGAUUGCAACCUGUCUCGUGUUUAUUAAACGAGCCGUAGAGACGUGUGGAUUCGCUAGCCGGGCGUACGUGCAAAUUAACGUACGUACUCACUCAACUAGACUUAAUUAUUAGGGCACCCGUAAUGAUUAUCUAUAAACUAUCUACAAGAUAUCUAUGUCAGCAUAUUUUAUUGCUUGGAAGAGAUUAAAUGAAGAGAAAGAGCAAAGCUAUCUACUAACCUGGAUAUAGUCUAUAGAGAAAAACGAGACAAUUGAUUAGAGAGCUAUAGAUACCCAUGUAGACAUAUCAUUGAAGUGGUUUAUUAUUAAUCUAGUCUAUUGCUGAGAUGUACAUAUUUUAUAGAUAUCACCUUACUUUACCAUUGCGGGUGCUCUUAUGGGCCUAGCCGUGGAGUGCUAGAGAUGCCAAAAGAACUAAUAUUUUUUCUUUCUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.97%
ME_num:
MEP:
24.39%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.83
Avg Expression:
3.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.47969037161917 | 0.025490924093487 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.44615400488983 | 1.60589453318344e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.88371976577023 | 2.36415907330938e-08 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.84484067590106 | 0.0381234101021513 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.5418887295473 | 1.20541249286374e-10 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.84622539849982 | 9.68404043889446e-08 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | -1.72690095932081 | 0.0464638416526946 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.9129044138512 | 8.34542515066287e-24 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.20274367076908 | 3.68417860942027e-09 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.1312927479992 | 6.17485599134419e-05 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.01396361606991 | 0.0105490958180371 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.14652523526474 | 0.000347659884490049 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.86380232345358 | 2.18939453559437e-07 |
| 14 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.65052178614066 | 0.000132844228696827 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.48573629689474 | 1.36350114185022e-12 |