Chr:
Chr1
Start:
23921605
End:
23923092
Strand:
-
Ref_name:
OSA-LNCN0521
Sequence
(OSA-LNCN0521.1):
AAGAAUGUUAAAGCGAUUUGUAAUAUAAAACCAAGGGAGUAUUCUUUUUGUUCCCAAAAUUCCUCCUGUCAUCAUGUAAAACACUUUGCAGGAACAGCUCCCAAGGUUCGCAUCGUGCGGUUAUAGUCUUGUAGUUGUUGUAGAUUGAAGCUACUUGAGCUGACGAACGAUAUCGAUGCAUCGCAGUAUCGCACGGUAGGCGGUAGCGCAUCAUCCAUUGUUUUUUGAGAUCAGUGAGCUAAGCUGAGGCUCGCCCUGUACGUGCAGCCUUCCUCGCCCGGAGCGGCGACCUCCUGGUCACCGACGAGCUCCGCCGGAGCAGCAGCGCCUCCGCCACGCACAGGUUCAGCACCACCCCUCUCCCGUCGACCCGGCCGCCGUACUGCCUCGACGCGGCACGCCGAAGCCUCGCCGUCGGCGCCGCCGCCGCCGCCGCCGACGACGCGUCGUCGUCCGAGCUCGCGGGUUCCUCCAGCAUCAUCCGCCGCCGUCGUCGCACGGAGCUGAGGUACUCCCCCACGACGCGACCCAGCAGCUGCAGCGGCGACGGCGACGACGACGACGACGGCCACCACCACCGCGUGUCCGCACGUAGCUGCGAGAACCUCCACCACGCCACCGCCGCCGCCGGCCGCCUGCCCAGCCUGAUCCCUCCGCCGACCGCCGCCGCCGCCGCAGGCCGCCGCCUCGGUGUCGCCGGCGCCGGCGCCAGCCGCCGGUAGCUCCUCGUCCACCGGUGAGCCCAGCAUGACCGGACGCUCCGGCACACCUUGGCACCAAUCGAUCCUUCCAUGCGUGCGUAUUGCACUUUCGUCACUACGUGCUUGCUAGAAUUAAUUAACUCCAAAUAUGUUUGCACAAUUUCGCCUCCUAUGAUCCACAGUGGAUGUUGCAGUUUGCAAAUCUGUAAUUCUGAGAAUUCUUGGGUAUAUGUAAUGCAGAGGUUUGAACAAUCUGUGGCUUUACAUGAGAGUGAGACUAGAAUCGAAUGGAAUUCAGCUAGAAUUUAAGCAAGCGAGGGUGUGUGUGUUCUUGCCUUCUUGGUCAAGUUGUGCAAGUUGCUGGGCUUGACUAGACUGGGUUGCCUCUGCAGAAGGUGCGAGGAGCCGAACCAAACGGCCCAGCUGGCCAG
Sequence
(OSA-LNCN0521.2):
AAGAAUGUUAAAGCGAUUUGUAAUAUAAAACCAAGGGAGUAUUCUUUUUGUUCCCAAAAUUCCUCCUGUCAUCAUGUAAAACACUUUGCAGGAACAGCUCCCAAGGUUCGCAUCGUGCGGUUAUAGUCUUGUAGUUGUUGUAGAUUGAAGCUACUUGAGCUGACGAACGAUAUCGAUGCAUCGCAGUAUCGCACGCCUUCCUCGCCCGGAGCGGCGACCUCCUGGUCACCGACGAGCUCCGCCGGAGCAGCAGCGCCUCCGCCACGCACAGGUUCAGCACCACCCCUCUCCCGUCGACCCGGCCGCCGUACUGCCUCGACGCGGCACGCCGAAGCCUCGCCGUCGGCGCCGCCGCCGCCGCCGCCGACGACGCGUCGUCGUCCGAGCUCGCGGGUUCCUCCAGCAUCAUCCGCCGCCGUCGUCGCACGGAGCUGAGGUACUCCCCCACGACGCGACCCAGCAGCUGCAGCGGCGACGGCGACGACGACGACGACGGCCACCACCACCGCGUGUCCGCACGUAGCUGCGAGAACCUCCACCACGCCACCGCCGCCGCCGGCCGCCUGCCCAGCCUGAUCCCUCCGCCGACCGCCGCCGCCGCCGCAGGCCGCCGCCUCGGUGUCGCCGGCGCCGGCGCCAGCCGCCGGUAGCUCCUCGUCCACCGGUGAGCCCAGCAUGACCGGACGCUCCGGCACACCUUGGCACCAAUCGAUCCUUCCAUGCGUGCGUAUUGCACUUUCGUCACUACGUGCUUGCUAGAAUUAAUUAACUCCAAAUAUGUUUGCACAAUUUCGCCUCCUAUGAUCCACAGUGGAUGUUGCAGUUUGCAAAUCUGUAAUUCUGAGAAUUCUUGGGUAUAUGUAAUGCAGAGGUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.72%
ME_num:
MEP:
29.27%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.81
Avg Expression:
1.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.46163794087309 | 0.000836393886996226 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.46227693223005 | 0.000350225695584 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.52607928544553 | 0.00499474292384325 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.16224858395275 | 0.00023428384048905 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.09019404927658 | 0.00569557706689118 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | -2.92061362612245 | 0.00110497205093602 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.85647237340609 | 2.37658941204721e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.88101193203596 | 0.0431012274101812 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 4.24424239396339 | 0.0359353554261128 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.26757649303022 | 0.028390509255315 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.86190552179909 | 0.0229534848251216 |