Chr:
Chr1
Start:
23900506
End:
23903220
Strand:
+
Ref_name:
OSA-LNCN0518
Sequence
(OSA-LNCN0518.1):
AGGGAGUAAAGUGAAUUUAUUUAUUCCCUUGAAAAAUGUGCUUGGAUGGGCUGGUAACCCACUAGAGCUACUGUGCUCAAAGGGACCACCUAUACAUUUAUCGACAAAUUUUCUUCUAAAAAUUUGACAAAUAUAAUUAUAGUACAAUCGUAGUGUAAUUACACUGUAACUUGUAUAUAAUUACACUGUAAUUUGUAUGUAACUACAGUGUAACUUGUAUAUAAGUUUCACGUAAUUUUGAAUCGUUAGAUGUAUUACAAAAUUUGUUCUGGUGAGGAAGAAAAAAAAAUCACAUCACACACAUAUGUGAAAGAAUUUGUUCUCACAACCUCCAUUUUACCGAAAUAAAUGUUAUGGAGAGAUUUUUGAAAGUUACAAAAAUGUUACAUCAUAGUUACAGUGUAAUUAUAUGCAAGUUACAGUGUAAUUACACUACGAUUGUACUAUAAUUAUAUCUGUCAAAUUUUGGGUGAAAAAUUUAUCGACAAAUAUAUAGCAAAUUCGGUGCUCAAAUUGGGCCGUUUCACCUAGAAACUUAAAAAGGAAAAUCUCCUCGGUCAGCCAUAUUUUUUUUUCCAACGACUAUCGAAAUUUCUAUCGGGCUCGCGAUCUCGCUCGCUCCGCUACCUCAGUAAGGUUCUUCUGGUUGCUUUGCUGCAAUCCAGAUUGUUGUCCUUGCCAUCUUGCUCCCUCACAAGCUCACCCGAUUGAUGCCACAUUCCUGGUCUCGGAUCGGCGCCGCUUCCGUUCCACUAGAAAGCCCGCGUUGCGUCGAUCCUCUCCUCCACCACUGCAACGAAAUUUCCCUACUGCAACGUCCCUCGCCUCGAUCCAUAGCACAUUAGCACCACCUUUGCUGCCACCUCGCUUGCAUAUGCCUCUGUUGUCUUGCUGGCAUUCAUAUGUGCCAGGGGCAUUGUCCCGACUCCUGAGGCCGUGUGUGCUUCGAAUUUGUUGCCGGUUUCUACUGCUUGGUCCAUGAGUCCAUCUAUUUUAAUUUUUAGUCUGCAAAUUUCAUGCAUUAUUGACACUCUUUCGUCAAUUGAUAUUGAGACUUUAAUCCCCCAACGCUCACAAGUAUAAUGCUCCAUAAUCUCUUGAUUUCUGGAUAAUGUUUAGUAUUACCCUUCUCCCAAAUGGUCAGUGUAGUAGGGACUUUUACUUCACUGGUAACUUAGGGUAACAGUAAAUUAUCGAAUCAUGCAAACAGGCUGUAGGGGUGAAAACGGUCGGAAUCGGUAGCAUCUCUUUGGAAACGAUACUCGACCAGCCGGUAAUUGAUCAUAUUUAUCAUUUAAACUAGGAAAAGGUAUGAAUUACCCCCCCUAACUAUCGCGGUCGUCUGAAUUACCCCCUGAACCACAAAACCGGACAUUUUUCACCCUCAACUAUACAAACCGGAUGAAUUACCCCCCUCGACCCAAUCCACGGUAGUUUUGGUCUACGUGGCGUAUGCGUGGCAGUCCAGUCAGCAUUAUAUAUAUAUAUGUGUGUGUGUGACCCACCCGUCAUACACUCUUCCUCUCUCUCUCUCAAUCUUCCCCCUCUCUCACGGUCAUCGGCAUGCGGGGGCGGCGACUGAGGGCGGUGGGGGCGGCUGCGGCGGUGGCGGCGGCUGAUGACGGUGGUGGCGGCUGCGGCAGCCGCGGCUGAGGGCGGCGGGGGCGGCUGCGGCGGCGGCGGCUGAGGGACGGUGGGGGCGGCUGCGGCAGCGGCGGCUGAGCUCGGGGCGCGACGGCUUUGGGUGGAGGCGGUGCUUGGGCGGCGGAGGAGGGUAAUUCGUCCGGGGCGCGACGGCUUCGGCGGUAGGCAGAGCGACGGCGAUGGGUGGAGGCGGAGCCCCGCCUCCGCCUCAGUCGCUCGCUCCCCGGGCGAGCCGCGCCUCUGCAACCGGUCACCCUGUCCGCCUCCGCCACCAUCACCCGCCGCCCGGUUUGCCUCCGCAGCGGCCACCAACCGCCUGGGCGACUCCGCCUCCACCGCCACAGCCGGCCGCCCGAGCGCUUGCGAGAGAGAAAUCGGAGUUCAUCGUCUUCAACCGGUACAGUGCGGAUGUUCUCCGCCGCCGCGCUCGCCUCGCCCGUCCCCGCAGCGCUCUCCUCGCCCGUCCCAGCCGCGCCCGCCUCCGCCUCCCAUCCCCGCGAGGUCCGCCUCCGCCGUAGACCGCCGGUCGCCCGAGGGAGACUGGGAGAGAGAGGGAUAUAUAUAUAUAUAUAUAUAUAUAAGCCCAGGGCAGUGACUAGGGGUCUAGUCACCAGAUAUGAGGAUAGGAAUGCUUAUCUAUAUGCAAUCUUUGAUGUGAGAUUAGUAUGUGACAAUUGGAUGGCAAUCCAGGUUGUUAAAUUUUUUUUUUAAUAUUAUUAUGCAAACAUAAAUGCAGUACUGGAAAUAAAGAUGUAAAUACAAAUUAUGUACAAGAUAUAAAAUUAGAUAUUUAGAACAUAAUAGGUUUAUAUAGAACGGUCCAGGUGUUCAUUCAUAUACCUUGAUAGGUUGAAGGUAGUUCCUUCUGAAGAUUACACCAAGGACUUGGUACAACACGUUCGUAAUUAUACAGGUACAGGACUCUCACAAAGACUCUUACAUAGACUCUCACACUUAGACUCUCAUGAGUCUUUUAUUUAGGUUAUACUAUAGUACUAACACUUUGAUGGAGUGGAGUGGAGUGUGAUGGCUGGUGGAGCGGUGAGAGGAACGGUUGAGUGAGAUGUGUUG
Sequence
(OSA-LNCN0518.2):
GGGGGCGGCUGCGGCGGUGGCGGCGGCUGAUGACGGUGGUGGCGGCUGCGGCAGCCGCGGCUGAGGGCGGCGGUGCUUGGGCGGCGGAGGAGGGUAAUUCGUCCGGGGCGCGACGGCUUCGGCGGUAGGCAGAGCGACGGCGAUGGGUGGAGGCGGAGCCCCGCCUCCGCCUCAGUCGCUCGCUCCCCGGGCGAGCCGCGCCUCUGCAACCGGUCACCCUGUCCGCCUCCGCCACCAUCACCCGCCGCCCGGUUUGCCUCCGCAGCGGCCACCAACCGCCUGGGCGACUCCGCCUCCACCGCCACAGCCGGCCGCCCGAGCGCUUGCGAGAGAGAAAUCGGAGUUCAUCGUCUUCAACCGGUACAGUGCGGAUGUUCUCCGCCGCCGCGCUCGCCUCGCCCGUCCCCGCAGCGCUCUCCUCGCCCGUCCCAGCCGCGCCCGCCUCCGCCUCCCAUCCCCGCGAGGUCCGCCUCCGCCGUAGACCGCCGGUCGCCCGAGGGAGACUGGGAGAGAGAGGGAUAUAUAUAUAUAUAUAUAUAUAUAAGCCCAGGGCAGUGACUAGGGGUCUAGUCACCAGAUAUGAGGAUAGGAAUGCUUAUCUAUAUGCAAUCUUUGAUGUGAGAUUAGUAUGUGACAAUUGGAUGGCAAUCCAGGUUGUUAAAUUUUUUUUUUAAUAUUAUUAUGCAAACAUAAAUGCAGUACUGGAAAUAAAGAUGUAAAUACAAAUUAUGUACAAGAUAUAAAAUUAGAUAUUUAGAACAUAAUAGGUUUAUAUAGAACGGUCCAGGUGUUCAUUCAUAUACCUUGAUAGGUUGAAGGUAGUUCCUUCUGAAGAUUACACCAAGGACUUGGUACAACACGUUCGUAAUUAUACAGGUACAGGACUCUCACAAAGACUCUUACAUAGACUCUCACACUUAGACUCUCAUGAGUCUUUUAUUUAGGUUAUACUAUAGUACUAACACUUUGAUGGAGUGGAGUGGAGUGUGAUGGCUGGUGGAGCGGUGAGAGGAACGGUUGAGUGAGAUGUGUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.93%
ME_num:
MEP:
47.97%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.97
Avg Expression:
39.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.38726098233418 | 1.77402872380845e-05 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 9.91014762110182 | 1.73501769931304e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.02914639990185 | 7.29196832572363e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.38987733854288 | 0.00120427705073312 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.918943384114 | 0.00273447197179073 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.81748199474124 | 0.000929944985212359 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.6285342635755 | 3.36450564066123e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.89761020140703 | 2.3265284262932e-08 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.03837252969113 | 2.24661855281715e-09 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.99860075522883 | 7.53906702449509e-07 |
| 11 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 10.6277296183924 | 8.89402206480345e-14 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.39521113992896 | 2.37508220125754e-17 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.07822762200938 | 0.00772188516842666 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.06862712049288 | 1.21166182986021e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.36651525417501 | 1.72723119382341e-06 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.21238263561955 | 0 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.03402007818319 | 6.43081409340486e-07 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.48509865466785 | 0.0184041819791578 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.04394816540734 | 8.6068974064214e-07 |