Chr:
Chr1
Start:
23890007
End:
23897806
Strand:
-
Ref_name:
OSA-LNCN0516
Sequence
(OSA-LNCN0516.1):
CUAUAAUUGAGAAAGUUAGAGUGGACUUAUUCAUUUUUAAAGGCCUAAUAUGAUUUUUUUUCAGGCCCAUAUAUUGCACUAGUCUUUUAGUAUAGUAAGGUAAUAAUAAAUACUAUUAUAACCUAUUGGAUAUGCAAUCCAAUCCAGUCAUAAUCCUCGUAAUUACACAUUGCUAUCCUUAGCAAAUCAAAGAUACGCUCCUAAUUAAUCUCUCGGGGUUUAUAAUAAGCAUCCAAUCAAACCCAACAAAUUAUGGAUGGGGUUUCUCCCUUUGGUAAAGAUAAGCUUCUAAACUAAGCCAGCAAUUUCGUCAUCUAUAAAUUACCUAGGACCCAUUGCAUUCCAUCAGCACACAAAACAAAGGUCCAAUUCAGCAAUCAUCACACACAAAUACAAUAGUACAUAGUUACAUACCACAAACUUCGCAAACCACACAACAUGAAGUGCAGCGCCAUUUUCAUGCUCUUCCUCGCCCUCGGAAGCCUUGCCAUCGUGGUACAUGGUAAUUAAUUAAGUGUGGUCAGAGGGCAAUAACCUCACCAUUUCUUUCUCAUCUUUCUACCGAUCCAUAUAUAUGUUCAUCACACACCGAAUAAUUAAUCUCUGUAAAUUUCUUUGGAAUAAAUAAUUAACCCCAGGUGGCCGCACACACGCCGUCGUCGUCGUCGAGCCGGCGAAGAAAUCAGCUGCUGGUGGCGGCGUCGUGCAGCCGGAGAUGGACCCGAUCACCAUCUGCAGCCCGUCCAACUUCUGCAUCCCGGAGGCGUGGAGCUCCUGCUACAGGUGCAUCGUGAAGCCCGACGACAACCCGCCCUUCCGAACCAUCGACGAGUGCAAUAGCAACUGCCCGGUUCCUCCGGCCAACGCUUAAUUAGUUACGUGUUCUGUUGGGUGAGGAUGGUGUCUUCUUGAUCUUUAGCGAUAACGGGGGUGCACCCAUGUGAUCCUAUACGGCUAUUUUUAGAAGAAAAGAUUGAAUAAAGAAACAUGAUGCUUUUGGAGGAUGUUGCAGGGGUACUGAUCAUAUGAGUAAUUUUUAUUAUUUAUAAAGGGCACAACAUCAAUAUAUGAACAAGAAUGGCAGAGCGAUUUGCUAAAAAGAUAGUAGUGUAAGGAGAGUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.61%
ME_num:
MEP:
69.11%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.73
Avg Expression:
5.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.19262543558807 | 0.000715592774167272 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.91386033478394 | 0.00034197983996451 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.41409128048959 | 0.0146853502471737 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.04656800099255 | 0.000540571795468176 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.15731616938963 | 0.0159280142553943 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.92565620482219 | 0.0227286104152012 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 1.64985185031805 | 0.00257864389497197 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.44669084799373 | 0.000796648040898306 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.35840344232694 | 0.00662250620678935 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.43296257721206 | 0.00385062860833245 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.44868915635783 | 0.0483852993071332 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.32930152042129 | 0.0309672407177729 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.7085670094742 | 1.99035724532118e-06 |
| 14 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.2334611005455 | 0.0073176913504053 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.05741503814096 | 0.00194461004247225 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.99080432497072 | 0.00222579876524127 |