Chr:
Chr1
Start:
23747531
End:
23748240
Strand:
-
Ref_name:
OSA-LNCN0511
Sequence
(OSA-LNCN0511.1):
UUCAUAAUACUCUCGCACUAUUUCCCCCAAUAAGAAAUGCUUAUCACUUAUUCCCUUGCUCUGAACAAACAGGUCAAUCACUGAUUAAGUACUAAUGUGCUAGUAUUGAUAAAUCCCCACAAUUUUUCAUCCCAAAUGUCAUCAAUUAUAAUGAGAUACCUAUAUCAUUUUGUAAGAGCUAGCAUUAAUUGCAGAAAUCAGUGAAAUGUAUAGCAUUUCUGUUUUCUGGGGAAAAAAAAGAGAGAAAAGGAUUGCCUAGUAUAUUAGGGUGAAAUGUGUAACAGUGACUCUGUUUCCUAUUUUACUGAAGGAACUCGUCUCUGAACUUCUGAAGGAAACCUGAGAAUAAGGCGUAACACUUAUUCUCAACAAGAAGUCCACCAAUGCAAUUUCCUGAAAAUCUUGGUGAUGUUGGGAUUCCUGGACACGGAAACAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.1%
ME_num:
MEP:
42.68%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.74
Avg Expression:
1.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -2.10977748522106 | 0.0108193936745013 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -2.91811594233868 | 0.0394351767750032 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -5.42970444423959 | 1.52277901285986e-06 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.97270472781197 | 2.38998619888663e-05 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.1597108866054 | 1.25391129788718e-06 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -5.32624394186 | 2.30527962810667e-06 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.09475983866684 | 0.0312122163575265 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.30780263554922 | 0.00277737394551981 |