Chr:
Chr1
Start:
23644836
End:
23648262
Strand:
+
Ref_name:
OSA-LNCN0505
Sequence
(OSA-LNCN0505.1):
CAUAGGCAUAGCCGCACGCGCUGCAGCCUCUAUCCUCAUCGCCGUCGUCGCCGCCCUCUCCCGCGCCGCUCCUCUCCACCACCGUGGCGGCGUCACCUCGUCCUCCAUUUCCCCAUCCACAUCUCCUUCACCGUCUCUUACACCUCCUCUCCGUUCCCAGCACCUCCGCACCUCGUCCUCCCCAUCCCCAUUGCCCCACCGUCGCCACCUUCAUCUCCCCGUCUCCAUCGCCUCAUCCUCUUCCCCAACACUUUUAUCUCUUUCUCUCCACAUAUAGAUCAAUCAUGCGACAAAUUAGCUCGAUCUAUAGAUGGAUCUUAGCGGCAUUGUCGAUCUGUGCCCAGGAUGAGGAGAUCGGGGUUGGGGAGAUGAGGAGGCGACAACUGCGUGUCGUCAGAAGUCAUCGCCAUCUCCUCCCUUCUUCCUAGCUAGCUCCCAGCCUCGCCUCAACUACCACUCGUCAGGAACUCAGGAGUCAGGAUUGCUCCAAGCAUGCAUGACAAGAUCUUAGCUAUGCCUAUGCUUCAGCCGAUAACUGGCUUCCUUGAUUUCACCAUCCAUGCACACAAGAUGCUCGAUGAAAAGUUUACUUGAGAUUGGUCUGCUAUUUGAUCAGUUCCCGUGGGAACUCCCCAGCUAGCUAGCUUAAACUUGCGAUUAAUUUAACUCAAGCAAUGAAGCGAAUAAGCGAUGCAUUCAUCCGUCAGUUGAUGAUGGCUUUUGAGUACAUCUUCAAGGAAGAAGCAGCAACCUUUUCUACUAUUGACAAAGCGCAUGAUUGUUUGUCACAGGGACUGAGAGUCACCCCUCAACUUCUUAAAUGAUUCUGGAAUGGUGUCUGACAUGUUAGACGGAGGGAGUAGGUAAUUGGCAAUCUGUCUAGCAGAAUGUGGCCAGAAAAAAAAAAUGAGCGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.3%
ME_num:
MEP:
36.79%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.76
Avg Expression:
5.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.15049472212777 | 0.000648217332797387 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.96650231046327 | 0.00116630835995695 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.06059141848292 | 0.000615894370133518 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.37613369169665 | 0.014288048892984 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.3562069596102 | 0.0172077135747919 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.10612461535523 | 0.0261825874232553 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.93637678125917 | 0.0346246664744546 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.89608031533538 | 0.000919577344329771 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.92910449913929 | 0.00162878146947064 |