RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0460

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

21704697

End:

21707059

Strand:

-

Ref_name:

OSA-LNCN0460

Sequence
(OSA-LNCN0460.1):

GCUUGAGGGCAGUCUAUGACCUAUGAGUCUAUGACCUAUUAGAGCUGCCGGAUGUAAGUUACAGACGGCUUGAGGACAGUCUAUGACCUAUGAGAGCUGUCAGAUGUAAGCGGGCUUGGCCACCUAUGAGAGCUGCAUGUGAGGGCAGUCUAUGACCUAUGAGAGCUGCCAGAUGUAAGCGGCUCGGCCUGGGAGAGACAGGACGUUACAGACGGCUUGAGGGCAGUCUAUGACCUAUGAGAGCUGCCAGAUGUAAACGGGCUCGGCCUGGGAGAGGCGGGACGUUACAGACGGCUUGAGGGCAGUCUAUGACCUAUUAGAGCUGCCAGAUGUAAGUUACAGACGGCUUGAGGACAGUCUAUGACCUAUGAGAGCUGUCAGAUGUAAGCGGGCUUGGCCACCUAUGAGAGCUGCCAGAUGUAAGUUACAGACGGCUUGAGGACAGUCUAUGACCUUAUGAGAGCUGUCAGAUGUAAGCGGGCUUGGCCACCUAUGAGAGCUGCCAUAUGUAAGUUACAGACGGCUUGAGGGCAGUCUAUGACCUAUGAGAGCUGUUAGAUGUAAGUGGGCUUGGCCUGAGAGAGGCGGGACGUUACAGACUGCCCUAUGAGAGCUGCCAGAUGUAAGCGGGCUCGGCCUGGGAGAGGCGGGACGUUACAGACGGCUUGGUGCCAGUGGUUAGGAAAACCCAACACCGACGUGGCUUUUGUUGUACAGGUGGUGACUUUGGGUGCGCAUGAGACAUUGAGUGAACUUCCUUGUAGGCCAUGGCGGUUGGAUGAGACUCUAAGGCGAAAGCCUUGGGUGGCUUGCCGGCGCUAGGAGUGGUGACAGCAUCGGGCAGUGUUCCCCUUUUUGAAGAUGUUGCUACGGAUUCUGUUGUUUCUUCGUCGCCUCAAGGAAUCUCUCCAGUGGCCAACAGCCGCGCGCGUGUCUUGCCGCUUGCUGGAGCGGCGGAGCCAGCGACGGCGUUAACUAGCGGUGUCGGCGGCACGGAGAAGGAGCGCGCAGUAGCCGGCGGAAACGACGGCGCUGGGAAGGAGUAGCUCCAUGAGGGGAGGAGGCAGCAGCAAGCAGCUGGGUCGCAGAGACUUGUCUGAGCAUUCAUCGACCAAUUCUGCACCUUCACAUUGUGUUUCAGAAUGUUCUAUGUACAGCAGCAUGGUGUGUGUCGAAGAACAGUAGCAGGAAGCAAGAUGAACAAUGUGUUUUGACUGAAUUGUUGGGUUGUUCUUGCCUUCUUGGAUUCUCCAUUUUAGCUUCAUGUCUAUGAGCACGAUUUGAUCAACCCAAGCUGACCAAGUUCCUCCUGACAAAGUUGCCAAGGUAGAACAACAAUCCAAUGUGCUGCCAUCAUUGUUGUCUUCGUGGUGACCUGGUCGGGAUUGUUGGAAUAUAAAAUGAAUUGACUACCUUUCCUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

467

LEP:

94.92%

ME_num:

21

MEP:

4.27%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

1.92

Tip: OSA-LNCN0460 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-4.056919079785440.00870134379971783
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.502802773555320.00101274611205729