Chr:
Chr1
Start:
21697861
End:
21704382
Strand:
-
Ref_name:
OSA-LNCN0459
Sequence
(OSA-LNCN0459.1):
UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCAGAAAAGAAGUUGCAACUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACAUCCUCACCCCCUUAAGACAUCGACGUCCUCGUCGGUCAACCCCAGGUCAGGAACGUCCCAUCCUGGCCACGUCCGUGCGUCCAGUGCCAGCGCAUGUGCCAUGCUGUGUGACCACUCCGGAUCCACACCAGCCAUGCGCACCAUGCUCGCGCAACUGCGACACACGCGCCCGUGAAACCACGAGAGUCGGCUCUGAUACCACUUUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUAUAUCCGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUCAUCUUUUAUUGUGCUAGAGAGGAAAAAAAAGUAAAUUACACUUUGUACUAGUUUUCAUAUUAUGUCAUUCUUUAACCAUUAUUUUCAUUUACACAACAGCUAACUUUACAUUU
Sequence
(OSA-LNCN0459.2):
UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCAGAAAAGAAGUUGCAACUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACAUCCUCACCCCCUUAAGACAUCGACGUCCUCGUCGGUCAACCCCAGGUCAGGAACGUCCCAUCCUGGCCACGUCCGUGCGUCCAGUGCCAGCGCAUGUGCCAUGCUGUGUGACCACUCCGGAUCCACACCAGCCAUGCGCACCAUGCUCGCGCAACUGCGACACACGCGCCCGUGAAACCACGAGAGUCGGCUCUGAUACCACUUUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUAUAUCCGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUCAUCUUUUAUUGUGCUAGAGAGGAAAAAAAAGUAAAUUACA
Sequence
(OSA-LNCN0459.3):
UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCCGGCAGCUCUAAUAGGUCAUAGACUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUC
Sequence
(OSA-LNCN0459.4):
UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCCGGCAGCUCUAAUAGGUCAUAGACUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCA
Sequence
(OSA-LNCN0459.5):
GUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
28.86%
HE_num:
HEP:
70.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.92
Avg Expression:
364.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.10778470324602 | 0.013175999031311 |