OSA-LNCN0459


Function Link


Basic Info

Chr:

Chr1

Start:

21697861

End:

21704382

Strand:

-

Ref_name:

OSA-LNCN0459

Sequence
(OSA-LNCN0459.1):

UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCAGAAAAGAAGUUGCAACUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACAUCCUCACCCCCUUAAGACAUCGACGUCCUCGUCGGUCAACCCCAGGUCAGGAACGUCCCAUCCUGGCCACGUCCGUGCGUCCAGUGCCAGCGCAUGUGCCAUGCUGUGUGACCACUCCGGAUCCACACCAGCCAUGCGCACCAUGCUCGCGCAACUGCGACACACGCGCCCGUGAAACCACGAGAGUCGGCUCUGAUACCACUUUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUAUAUCCGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUCAUCUUUUAUUGUGCUAGAGAGGAAAAAAAAGUAAAUUACACUUUGUACUAGUUUUCAUAUUAUGUCAUUCUUUAACCAUUAUUUUCAUUUACACAACAGCUAACUUUACAUUU

Sequence
(OSA-LNCN0459.2):

UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCAGAAAAGAAGUUGCAACUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACAUCCUCACCCCCUUAAGACAUCGACGUCCUCGUCGGUCAACCCCAGGUCAGGAACGUCCCAUCCUGGCCACGUCCGUGCGUCCAGUGCCAGCGCAUGUGCCAUGCUGUGUGACCACUCCGGAUCCACACCAGCCAUGCGCACCAUGCUCGCGCAACUGCGACACACGCGCCCGUGAAACCACGAGAGUCGGCUCUGAUACCACUUUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUAUAUCCGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUCAUCUUUUAUUGUGCUAGAGAGGAAAAAAAAGUAAAUUACA

Sequence
(OSA-LNCN0459.3):

UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCCGGCAGCUCUAAUAGGUCAUAGACUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCGGAAAAAGAAGUUGCAAUUUGUUGAUAUGAGUAUUCUAUUAAUCCUAUUAAGCCCUAGGCCGGGAUGUCACACCGUCGAAGGCGUCCAGCUGUCAACAUAUCAUAAGAUUAUUAGUAAUAUCUAAAUACACCGGCCCAACCAUACCUAGCAUAUCACAAGACUAUCGGGUAAUGGACAACUC

Sequence
(OSA-LNCN0459.4):

UUUAUACAGCUGGCAUCCACAUAUGCCAAAACCACCAUAAAAACAGCAUAUGAGUUAAAGUAUCCGGUUUUAAUAGUUGGAGGGUGUAUUAUAUCCGGUUUUGUAAUUUGGUGGUGUAUUUUAGACAAGCACAAAAGUUAGUGGGUGUAAAAUGGACUUUUCCCUAAAAGAAAAGAGUUAUCCCGUUUAUAAGGAAAACUAGAGAAAAAACCAUUACAACAACACGGUUUAAUUGAGGAAAAAACAGCAAAAAUCCUAGGACGUUUUCAAAGAGACCUAAUCCUUGCAAACCCAAACCUAGUAACCAUGGCCAACAGUCCUACAAUCAAAAAAAAAAUCCUAAGACUAGAAGGACACACCGACAGAACAACGAUAACGCCUAAGUCAAAUGAAUAUAAAAUUUUCACCUGGAGAGAUUCCUUGAGGCGACGAAGAAACAACAGAAUCCGUAGCAACAUCUUCAAAAAGGGGAACACUGCCCGAUGCUGUCACCACUCCUAGCGCCGGCAAGCCACCCAAGGCUUUCGCCUUAGAGUCUCAUCCAACCGCCAUGGCCUACAAGGAAGUUCACUCAAUGUCUCAUGCGCACCCAAAGUCACCACCUGUACAACAAAAGCCACGUCGGUGUUGGGUUUUCCUAACCACUGGCACCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGCUUACAUCUGGCAGCUCUCAUAGGGCAGUCUGUAACGUCCCGCCUCUCUCAGGCCAAGCCCACUUACAUCUAACAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACUUACAUAUGGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCACAUGCAGCUCUCAUAGGUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCCGGCAGCUCUAAUAGGUCAUAGACUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCCUCUCCCAGGCCGAGCCGCUUACAUCUGGCCGAGCCCACUUACAUCUGGCAGCUCUCAUAAGUCAUAGACUGCCCUCACAGACCAACACAUGUUUUUUCUGCACACUUUGUCCUCACUCGUGUGCACCCGGGAAGAAUUUCCCGGUCAAUCACCCAUCCCGAAAUUGCUCCAGACCAAGCACGCUUAACCUCAGAGUUCUUUCGAGAUCGGCUUCCA

Sequence
(OSA-LNCN0459.5):

GUGGCCAAGCCCGCUUACAUCUGACAGCUCUCAUAGGUCAUAGACUGUCCUCAAGCCGUCUGUAACUUACAUCUGGCAGCUCUAAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCCGUUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCCGCCUCUCCCAGGCCGAGCCUGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCCUCAAGCCGUCUGUAACGUCCUGUCUCUCCCAGGCCGAGCCGCUUACAUCUGGCAGCUCUCAUAGGUCAUAGACUGCCC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

3

LEP:

0.61%

ME_num:

142

MEP:

28.86%

HE_num:

346

HEP:

70.33%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.92

Avg Expression:

364.47


Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"2.107784703246020.013175999031311