Chr:
Chr1
Start:
21230135
End:
21235184
Strand:
+
Ref_name:
OSA-LNCN0456
Sequence
(OSA-LNCN0456.1):
AAAAUAACCAGACAGGGUUUGACAUUUGAGACAUAGGACACACAAGGUUCAGGACCAGUCAUUACAAAUGCAGGGAGUUACACAGCAGAUGACAGGAACAACAAUAUCAGACAACCAAGGUACACAAGAACAUUUAAACGUUAUCUCAAGCAAAACAUCUACAUGCUAUCUACAUCAUGGAAUCAAAACCAUUACAAGGCAACUUGCUUACUUUCUCAUAAGCAUGCCAAUAGAACAAAAGACAACAGGGGUUGUUUUAGAAUAAUAAAAUGUUCCCCAAAGCAUUCCAAGGAUUCCUUUCAAAAAAAACAAGUACUCCCUCUGUUUUUUUUAUAUGACGUAAUGAACUAACCAACGUCAUAUAUUUAGGGAUGGAGGUAGUACUAAAAUUGAGUUUUUUUUUUUGGUUUUACAAAAUCUCAUUGAUGCCACCUGAGUUCUCAACAAAAAAGGACAAUGUUGCCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.71%
ME_num:
MEP:
46.95%
HE_num:
HEP:
46.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
93.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.05323825755028 | 0.000221548293438927 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.73134910063862 | 0.0245753417101978 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.63895155109966 | 3.60723696944095e-05 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.01961217257645 | 0.000178762065266648 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.01532535094998 | 0.000697248114634916 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.94212729946565 | 0.000128618765638296 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.8934255809817 | 0.0137860701230345 |