Chr:
Chr1
Start:
21070237
End:
21077108
Strand:
-
Ref_name:
OSA-LNCN0453
Sequence
(OSA-LNCN0453.1):
UUUGAGGUGAAGAAACAACCAGCAAACACAAGAGAGAGGGAGAGGAGAGUGGAGAAGAAGUGCAACUUGUUCAGCUUGGGGGCUCUUACCCGAUCUUCAUCAAGUCAACGAUUGGAGGCUCAAACGUGGUUGGAUUGGCACCAAACUUGCUUGGAAGGGAAUCAUAGACCAUCAUUUCUGCCAAGUUUCGUGCAACUGUGGUUUGGAGAUCUCAGCUGAGAACCGAAAAGGACAGAAUCUGCUAUUUCUCUACUUGUUAGUUGAUAUACCUCUUGUUAGCUUUGAUGGUUGAGAUGUUGAUAAUGCCAUGUAACUUGAUGUUGUAGCUGUUGUGAUGUGUCUUUAGAUAUUAUAGAGAAGACUACAUUUGUACCUAUUGUUGAUUAUAGUGGAAGCUUGGAGUGGACCGUUGGUCCCGUGGUUUUUUACUCCUCACACCGAGGAGGUUUUUCCACGUAAAUCACUGUGUCUUGUGUGCAUGUGUUUAUUGUUAUUCCGCUACUGAUUUGCCAGUUGAAACUAUCCUCAAAGUUCAUGCCAAGAUGAAGGGUUGAUUGUGUGAAAUAUGUUUGCCGGUUGGUGAAUUGUAGUUUGCACACUAAAAGUGUUUUUUGCGCAGUCCCAACACCAUUUUCUUGCUGCACUUAACCAAUGCAUUUCUGGC
Sequence
(OSA-LNCN0453.2):
GCAAACACAAGAGAGAGGGAGAGGAGAGUGGAGAAGAAGUGCAACUUGUUCAGCUUGGGGGCUCUUACCCGAUCUUCAUCAAGUCAACGAUUGGAGGCUCAAACGUGGUUGGAUUGGCACCAAACUUGCCAAGGGCACCACUUGGGCCGUGCUAACAUCGCUAGGCCAGGGCGAGGCUGGGCUGCAGCCUGCAGAAACCUCAAGGUCCGAGGAACUUAGUGCUCUCUCUGCACAUCAUUAUACUUGGGCCUGCAUCUAGACGAUUGUAAUUUGUAGGAAAAAGUACACCGAUGGUCCCUCAACUUGUCAUUGAGAUACAAAAUAGUCCUCCAACCGCAGAACCAGAUAUAUAACGUGUCUCAUCUUACA
Sequence
(OSA-LNCN0453.3):
GCUCUUACCCGAUCUUCAUCAAGUCAACGAUUGGAGGCUCAAACGUGGUUGGAUUGGCACCAAACUUGAUUGUGCAAUAGUUAAUAAAGUGUCGGUUUAAGGGGUCAAACGGUGUCCGAUUAGGCUGUUUUUUGACAGCUUGGAAGGGAAUCAUAGACCAUCAUUUCUGCCAAGUUUCGUGCAACUGUGGUUUGGAGAUCUCAGCUGAGAACCGAAAAGGACAGAAUCUGCUAUUUCUCUACUUGUUAGUUGAUAUACCUCUUGUUAGCUUUGAUGGUUGAGAUGUUGAUAAUGCCAUGUAACUUGAUGUUGUAGCUGUUGUGAUGUGUCUUUAGAUAUUAUAGAGAAGACUACAUUUGUACCUAUUGUUGAUUAUAGUGGAAGCUUGGAGUGGACCGUUGGUCCCGUGGUUUUUUACUCCUCACACCGAGGAGGUUUUUCCACGUAAAUCACUGUGUCUUGUGUGCAUGUGUUUAUUGUUAUUCCGCUACUGAUUUGCCAGUUGAAACUAUCCUCAAAGUUCAUGCCAAGAUGAAGGGUUGAUUGUGUGAAAUAUGUUUGCCGGUUGGUGAAUUGUAGUUUGCACACUAAAAGUGUUUUUUGCGCAGUCCCAACACCAUUUUCUUGCUGCACUUAACCAAUGCAUUUCUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
26.22%
HE_num:
HEP:
73.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.77
Avg Expression:
69.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.06775594149151 | 0.00155722862486474 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.26331685300012 | 1.99858719729415e-05 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.32276907168486 | 0.00176036377922002 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.56085703528959 | 0.00812413206890381 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.10026422197895 | 7.71864307043985e-18 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.67142410169483 | 1.24156404413558e-25 |