Chr:
Chr1
Start:
20848696
End:
20863199
Strand:
-
Ref_name:
OSA-LNCN0447
Sequence
(OSA-LNCN0447.1):
AUUUGUUUCAUUGGACGAUGUACUGCUACUAUCUAUGCCUUAUAGAUCAACAACUCAAUUUAUGCAACAAUUUAUUAACAUAGUUGAUGAGGGGAGGAUUAAACUGUUGAUCUGAUAAUAAACAAUUGCUCCAACUAGUAAUCUAUUUUACUGGAAUAUGCUACUACAUGUUCCUUUUUAUUUUAAUCUGAACUAUCGAUGUCUUUAGAACAAUUCAGUAAGGUUUAAACUAACUCUUAACUAUUUAUGAAAUCAGGUUCAUGGUAAAUUUUAAAAUAUGAGCUAGGGUUCAGGUAUUAAUUCCUAAGUCUAAGAUUUGAUUUGCUCUAUGCAUCAAGUAUGAUAUAUCUGUAUGAACAAGAUCUGAAUUUCUAGAUUUGAUAAUAGCAUAAGUCUAAUCACAUACACACAUACACAUACACGCACACACACAUACAUACAUACAUACACAGACACAUACAUACAUACACACAUACAUACACACACAUACACACACACACAACACACACACACAGACAGACAGACACACACAGACACACAGACACACACACACACAGAGACAGACACACAGACAGACAGACACAGGCACACACACAGACAGACACACAACACACACACACAUACUCUCUCUCUCUCUCUUUAUAUAUAUAUAUAUGUAUAUAUGUAUAUAUAUAUAUAUAUAUAUGUUACUACAUGGCGUAAUUGUAACAUCGUGGUGAAAUUGUAGUAAACUAGGAAUCGAAACAAAAAUAUACAUGCUAACCAUAUUUUUGUUACUACACAAAAGUGUAAGUGUUACUGCAUGGCAGAUACAUGCUACCACAAGUUUAUGCAGUAACACUACAAAACUUAUAAUAUUUACCACACUUUCACAAUAACGUUAUGAUGGAAUUGUAGUAAUGUAUAAUAGAUAGUAAUAACACUUAUGAUAUAGUAUUACUACUUGUGGAGAGUUAAAUUUCAAAAGACCAAUCUUUGAAGGUUCUCUCUAUCCUUGCCCCAUGAGUAAACUGAGCCAAUUCAUCUCUCUCUCCAUAUUACUGGACCUUUUUUUUCUUACUAUACAUAUUCUUGCAGUAACGUUAUCAAGUAAUCGCAGUAACACAUUAUGUUACUAUGAAACUUAUAAUCGUUACUACAUCUUGUAGUAACGAUAUUACGUGAUUGCAGUAACGCAUAGAAGAUCAGCAGUAAUACUUAUGAUAUAGAAUUACUGCUCGGGGAGAGCCAAAUUUUUAAAAAACCAAUCUUUGAAGGGUAAUAUCUCUCACAUCAUGUACUACUUUUAAAAACCGUUUACACCAUGAUGUUAGAAAAGGAGUGCUUAUCGAAAGUAGAUCCGUCAUGACUAUAUUAUGAAUACAUUCCAAUAUUGUUACUGCAAGUAAGACAUGGUGUUACUGCACUAUGAACAUCGCGUUACUACGUCGUUCAUAUCUGAUCCCUUCCCCCUCCCGAUAUAGGGUAAGACUAUUCUACACCCAGGGUAUAGAAUCCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
36.99%
HE_num:
HEP:
11.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.86
Avg Expression:
9.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.76400945987162 | 8.68854940966431e-12 |
| 2 | Azucena // root // control--/--Azucena // root // Al | -1.21454399572182 | 1.77580511725178e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.20075809769909 | 1.09686909700263e-14 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.47765005412193 | 0.0143256703518666 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.94063836712637 | 4.69116728089358e-93 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.98717714570389 | 2.20044331137215e-08 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.8166481748492 | 3.22977214923908e-11 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.81779015130941 | 1.55942160031872e-05 |
| 9 | Nipponbare // leaf // wild_type_plus_1hr_shade--/--Nipponbare // leaf // wild_type_plus_1hr_white_light | -2.43655111004998 | 0.026785048528356 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.40604144062576 | 2.85128778179464e-14 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.58148979791268 | 3.6708353533738e-48 |
| 12 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.05246270880838 | 0.0453416866049519 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.43171662223133 | 0.0186977995356432 |
| 14 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.43161775411811 | 0.0189265967154745 |
| 15 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.43150898267122 | 0.0187490204125065 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.88949446414325 | 0 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.49304367994981 | 2.84330701932384e-13 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.28911637567363 | 1.01567469664194e-05 |
| 19 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.723749478383 | 0.00682662258074146 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.8560320175154 | 2.19827219776651e-14 |