Chr:
Chr1
Start:
19705892
End:
19710555
Strand:
-
Ref_name:
OSA-LNCN0417
Sequence
(OSA-LNCN0417.1):
AGGCAUGGACUCCCCAGCGACCCCCGUGGGCUUAUCUCCGCCACUUCUCAGUCUGGCACACCACAAUGAGCCUUGCUAUACAAAGUGUCCAGCCGUUGCCCAUUCUGGCUUGUGGUUGGCAUGGUUAAUGUUUCACAACCGAAACUCGUGAACCGGUCCUUAAUUGUCAUGAGCACUACCAUCAAAACCAUGUGCUCACAACCCACCAUUAUCAAGUUUUAGUUGGCACAUUAAUUAAUUAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.33%
ME_num:
MEP:
45.53%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.88
Avg Expression:
9.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.30237259789807 | 1.38248517181162e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.27162898723376 | 1.24350139161176e-16 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.46851680993806 | 4.65871111310319e-20 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.39123544611694 | 2.08259724317929e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.61676640000267 | 6.29592642021435e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.67713638077908 | 1.1970130413743e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.32040063587928 | 1.0269876788552e-18 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 5.01536121985755 | 0.0395383742093673 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.28382039722185 | 4.86072974359682e-15 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.66345830873755 | 1.31196350636045e-22 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.06773692077115 | 9.05210528589207e-05 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 3.08664343695497 | 0.00281400729226582 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -5.72994853778916 | 2.02454783682133e-12 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.49949241993641 | 1.69387378629469e-15 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.69816483365767 | 5.674605644174e-08 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.81455147077541 | 1.78863981214118e-22 |