Chr:
Chr1
Start:
19393403
End:
19394552
Strand:
+
Ref_name:
OSA-LNCN0409
Sequence
(OSA-LNCN0409.1):
UUUGCUGGUGAUGCUAGCUAAUUUGCCGUCGAGUUUAUCCUCCUUGAGUGCCGUGGAUGGUAGGGCGAAGUGAGAGCCGGUGCCGGUUUGAUAGCCACACGACAAAGAUAUAUCUCCAGGUAUUGUGCCGAACAUCAAUUCAUUCAGAUCAAAUAGCAAAAGAUAUUAGGCGCGGGCAAAAUUCGUCCUAGUCGUUUCUCUCUUCAUUCUCUCGCUUAGCUCCAGAUUUGCUGCGACCAGCGGCGAAGGCGCAAGAACUAAUUGCUACGGACUCAAUCCGGGGCACUUCCGUUGACAAGUGGUCUUGAUUGUGGGAUGUGAUUGAUUAAGUGGGGCAUGCGAGUGAAACAAGCGCCAGCAAGCGGCAGGCAGCAGAUUUGGGGAUAGCAAUUUACACCACCACAUCACCAGGAAAACAGUGAAAAAUACAGGAAAGCAACAUCGGGAGCCCAUUG
Sequence
(OSA-LNCN0409.2):
CUUGAGUGCCGUGGAUGGUAGGGCGAAGUGAGAGCCGGUGCCGGUUUGAUAGCCACACGACAAAGAUAUAUCUCCAGGUAUUGUGCCGAACAUCAAUUCAUUCAGAUCAAAUAGCAAAAGAUAUUAGGCGCGGGCAAAAUUCGUCCUAGUCGUUUCUCUCUUCAUUCUCUCGCUUAGCUCCAGAUUUGCUGCGACCAGCGGCGAAGGCGCAAGAACUAAUUGCUACGGACUCAAUCCGGGGCACUUCCGUUGACAAGUGGUCUUGAUUGUGGGAUGUGAUUGAUUAAGUGGGGCAUGCGAGUGAAACAAGCGCCAGCAAGCGGCAGGCAGCAGAUUUGGUGGCUUCGAUAUUUACUCCGAUCGUGCGACCACAGAUUCAUAACCGCAGAAAACAAUGAACCAGGGGAUAGCAAUUUACACCACCACAUCACCAGGAAAACAGUGAAAAAUACAGGAAAGCAACAUCGGGAGCCCAUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.2%
ME_num:
MEP:
52.85%
HE_num:
HEP:
21.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.74
Avg Expression:
6.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.63045037038818 | 2.91027665406869e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.72324858233341 | 3.16530505107744e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.96632596349029 | 4.0218697022607e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.18807789029216 | 0.0107414855947825 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.50399886799672 | 2.2117611442801e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.29925914472285 | 0.00251678766799558 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.64380449418073 | 1.99405319536328e-10 |
| 8 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.16180218750615 | 0.0089309077115075 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.00704806637189 | 0.0042363235345105 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.10108525932926 | 3.77584102374406e-10 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.93344719407687 | 7.8036227921063e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.77909591631283 | 9.97667066547358e-06 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.38822383978078 | 6.61729300432896e-09 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.3456366991104 | 0.0209314742044699 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.2410670814761 | 6.1157609795443e-07 |
| 16 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.50493849762539 | 0.00273137310923941 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.17557109279891 | 4.38942419975356e-10 |