Chr:
Chr1
Start:
19406866
End:
19407437
Strand:
.
Ref_name:
OSA-LNCN0406
Sequence
(OSA-LNCN0406.1):
UCGCCUCUGCACGCUCGUCAAACGCCUUGAGUUGACAUAUACUACUCCAUAGGAGUAGAGUAAUGCAGUAUAACGUGCGGGACGCGGCCGCCUCCACCGGAUGCGACGCGGACGCCUCGUGAAAAUGGGACGGCGGCGCGAGAAAACGGGAGGUUUCGCCGGCCAACGAGGCAACGACCCACCCGCUCCAGAUGUUGCGCCAGCGCUGCGCCCACGAGACCGACCACGAAUCCUUUGCUUCCGGCUGCGGCCUGCGGCGUUCUGACGUCCGAUCGCGGGGGUUCGGUUGAUUUCUCGGUUUCUGCUUUUAACGGCUGCAUGGUUCUGGAGUCUGUCUGUACUUCACCUGGAUUCUGUUCUGUAGGUGUACGUUCUACUACGGAGUACUAGCUGCUUCGACAUGUUGACUUCAGUUAAUUUUACCGGCGCAUUGUGUAGGGCGUGCAUAUAGUAAUAGUACUAGCACAUGUCGGGAGGAUUAUAUACAGUACUUGAGACAACGUGCGGCCGGCUCGUUGACAUGUCAAAGAUUUUGUGUGCAUGUGCUAAAAAGUGUGCAUACCCGUUCGUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
4.88%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.73367523515214 | 0.0209657180167771 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.68127505225513 | 3.04303381456812e-05 |