Chr:
Chr1
Start:
19109216
End:
19122558
Strand:
-
Ref_name:
OSA-LNCN0403
Sequence
(OSA-LNCN0403.1):
AUAGAGGAACACCUAUUGAUUGGACUAUCUUAAACACACAAUGUAGUAUGUCAGUGCUUGUUGGAAGACUGGAGAGAAGCAAAGUGGCAAAGUGGCAUUGCACCCAGAUGUGAUUCGCUGAUGCAAUGCAACCUCCAUUCAGCCAGUCGAGAUCAGUUAGAACCACGAAGCAAGACACGAAGCAAGUAGAUGCAUUGUUCACCACGGGCGCGUUGCGCUGAAGAUAUCAAAAGGCACGGUACAUGGAGAACGCUGCUUGCUCAGCAUGUCAUGCAGCACAUUACCUCUAUAUUCCCCUGACUAGCCGAUGAGAAAAUGAGGCCCUCCAACUCCCGACGCCUCUCAUGCCUAGCUUGAGAUAUCUAUGCCACAUUGCCAGAGAUGCAGAUUGUUGAGUUGCAAGUGUAGGACUGGCAUUUGCGAACAUCUUGAACUGGCACUUGUGUAGGACUGACUACCAUAUCCCAAACAGCUGUAUAUGUAUCUUCAGCUGCUUCUUGUAAUGGUCUUGCUAGCAAUCACCUCCGUCCUCCGGUUGUUGGUUGCAAUGAAAUACUCCUAUUUGGAAACCAUGAUCGCACUAAUUUAUUACAACUAAAGGGUGGCCAUUUAAGAUUUUGUACAUGGAGAUAUGGAGGUAUGAGGCGAAUUUUGUCGAUAUAGUUAAAAGACCCUGAAUAGCAUUCACACACGGUUCAGAACCUUCAUGAAUGAUUGUUUGAUUUUGUGUAUGUAUGUGAUAUGCCGUCAUAAAAAAAAAUUACGUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
19.92%
ME_num:
MEP:
44.11%
HE_num:
HEP:
35.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.62
Avg Expression:
10.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.36730439427512 | 0.000206431151618264 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.91957085293744 | 0.000419765818550836 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.71147494943534 | 1.55389126267433e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.60315735054262 | 6.19420412089089e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.15081707292754 | 5.65468049209859e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.13047700138601 | 2.44450892514022e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.16421350528162 | 0.0421482774032304 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.5610349324443 | 9.42332561291499e-06 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.62936804689593 | 0.0447238479040679 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.15892759841201 | 0.0252365962159918 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.30359759118242 | 1.76868505954665e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.01366831526032 | 1.57384310704397e-08 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.63603719286221 | 2.39350796255696e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.34316321326146 | 1.11411423050802e-09 |