Chr:
Chr1
Start:
18849953
End:
18851254
Strand:
-
Ref_name:
OSA-LNCN0399
Sequence
(OSA-LNCN0399.1):
UUUUGCUAUUUCUUCUAGAAGCGGAUGAUCUACUAAACAACUUGCAGCACACUAUUCAGGUUUAAGGAUAUCAUUCCUCCAUUCCAGACAUAAUGGCCCAAGCUACACAAUGUCAGGAUAGUGGAGAGUCCGAGAAUCUGGUUUACCGAAGGAAAGGGAUGCGGUCUCUUCCUGGACCAAGGGAGAGGACAGGGCAGAGAAGAAAACAUCCAUCGUGCAAGUUUGUUUGUAAAAUUACAGUAACAAUGUUCAUUCUUGAUUAUCCUAGCUGAAAUAAGUUCUACGUUUAUUCUUCAUGAAUUACUCAUGUUGUAGUCAUGUGCUCUAUUGUCAGGGGAAACAAAUCAAGCAAUAUAGCUCAACCAACUAAAACAGGCAACAAGUUCGCCCUGAUAUAGUAUGACAUCUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.74%
ME_num:
MEP:
65.45%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.61
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.99541594213817 | 0.00495927782786188 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.67861139274507 | 0.00210205706622459 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.69599238708446 | 0.00343958541853764 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.2619759932123 | 0.0142090126710852 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.08957327536498 | 0.00254869841478072 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.61051035844364 | 0.000733605370743916 |