Chr:
Chr1
Start:
17947142
End:
17951929
Strand:
-
Ref_name:
OSA-LNCN0379
Sequence
(OSA-LNCN0379.1):
GCGGAAACUGGAAAGGGGAGGGGGUGGGGUGGCUCUGGCUCCCGGUUUUGUGGAAAUCGUACAGCGACGGCCCCUGUUUCCGCUGCCUCUGUGGGCGCGCGCGCCCAAUACCGUGGGCGGGUUUCCGGAUCCCGCCUCCCGCCAGGUCCCCCCACUCUCCUCCCCCUCUCAGUUUCCUAGUCAUCCACCCCCAAGAAACCCACGUUUGUUUUUUCUUCUCCUCCUUUGCUGCUCUCCAUAGUUUUUGGCUGUUGCACCCGUGCCUGUACCCACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
46.75%
HE_num:
HEP:
46.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.70
Avg Expression:
14.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.25207370681758 | 0.0165359403023997 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.31307092706574 | 0.0331596329210294 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.48699125249006 | 0.0119832888892855 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.77142421784099 | 0.000720780405211469 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.75558817207024 | 0.0108780258036918 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.41026920668159 | 0.00573033712482165 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.11959481654264 | 0.000585618033452985 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.24195201544725 | 0.00572473552245144 |