RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0374

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

17621170

End:

17622802

Strand:

+

Ref_name:

OSA-LNCN0374

Sequence
(OSA-LNCN0374.1):

AAUGUGAUAAACACUGUGAAAAGGAGAUCGACAACAGCUACUGCAUUUAGAGGAGAGAGUGCAUCUAUGGGGAGAUAAAAACUACUUCCUCCGUUUCAUAAUGUAAGUCUUUCUAGCAUUAUGAAACGGAGGGAGUAGACUACAGAAGCUCAUUGGACUUGAGAAUGUUCAUCUUUGCUUAAUUCAUCUGGAUUUGCUGCUUUCCAUUUCAUACAGAAAGAGGUCCUUAAUACUUCAACUAAGAUAAAGUGUAAUAUAUAAUCUUAUUACUAAUGAUAAAACUGAAUAAACAAAUAAUAGCCUUGUCUGCUAAUAACUUAGGUAACUAGCUGCCUUUCUGCUACAGCACCACUCAGAUAAUCAUAUGUGAGUAGUACCAUGUGAAUGUGCACACUACCUCCCUGCAGAUAACAUAUGCAGGAUAAAUAACCAAAUCCAUUUUCUCUUGUACAGAUGACUAACUCUACCAAUACAGGAAUAAGACCUGAGUUGAUUCAAGGAUAGUACCAAAGCUUUUAUUUUAACCAACAAGCACACUCCAGGAUCACUCAUGAAGAAAGUGAUAAUGUGUUUUGAGGUAGUACUAGUGAUCACAUAGUAUUAAGAGUACAAGUUUACAACUGAAGUAAUUGUUCGGGCAAAUCUCAAUUUCUGGCAUAUAUCCAAUGGACUAAAGUAAAUAUAUAUGUGCAGUACAUAAAACGACAGCCUUCUAAAGGAAAGAAGGCAAAGUUCAGAAUAAAAUAUUGCACAAUUUCAGUUUUAUCUUGAAGCAAUAAAACACUAGCAUUGGUCUGCUCCAAACAGAAAAGACGAUGCUUAAUUUUAGGAGCUAGUUGUUUUUGUUCGUUCCAUUUCACCCGAGGGUUGUGCGCAUUGAAAACAAGAAUGCAUAUCGCAAAAAUAACUAGAGUGGGUUAGCCAAGCUUUGAUCAAAAGCGUGCAUGUGCCACCAGGCAAUUUAAAAUUCUCCUCCACAAGCACAAUAACCAAUCUGUACACGAAACGCUGUCAGCAAAUAUAGUUCCUGAAUAUUCCGGCUCCUCUGAUGUUCAUGCAACAGCUUACAAAAAAGGCAAGACAAGCUUUGGGGUAUAUAAUGAUAUGAGAACGCAUUUCUUGUUUGAAACUAGAUAAAUGUCUAUGUCAUGGGCAGUGGGCUGAGGAGUCGAGUCCCCAGGGAGCGGUACAGUAUUACAGUAGCUCAGUUAGUUAAGAGUCUGUUGGAUAGGAUUAGACUAGGUCCUUUCCUCCACCUAUAUAAGGAUGGAUUGCAUCAUCAUUCUAAUUGAGAAAUGAAUCAGAAUUAGUCUCCCCCAACCUAUAUCCCUUCUCAUCCCUAGAAGCCGUCGCCGCCCGGCAAUCCCCCAGGCGGUGUUUACCAACCCUAACCCAUAACAGGUCUAUCACAACUGGCUGUUUUGGAAUCUUACUAAACAAAAUCAAAUUCAGGGUUAAAACAUUUAUUGAUUACACCAUGCCACAAAAUAUGAAUCUAAACUCUGGUUGAAUCAAGCAACAAGGGAACGCCGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

89

LEP:

18.09%

ME_num:

396

MEP:

80.49%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.71

Avg Expression:

3.41

Tip: OSA-LNCN0374 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.201547289480896.24798848085136e-05
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.139303781497473.11063965684118e-06
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.198147276729445.49565171858208e-07