RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0372

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

17562367

End:

17564295

Strand:

-

Ref_name:

OSA-LNCN0372

Sequence
(OSA-LNCN0372.1):

CUGCAAAGUGAACAACAAAGUAUAAACGUUAAGGUACCUUUAGUACAAUAUUGUGAAAAUAGAACAUAGUACCGCCGAUAAUAUAUGACACCAUUGUUUUCUUUAAUUCGUUUGACUGUCUUUUCAAGAAAUAUGCAAAUAGACAAACAUACACGGCACGUUUAAAGUACUAUUGAUGACAGGUCUAGUGGUACUCUUUUCACUUAACUAAGUAACUGAAUAACUAGUGUACUAUUGUUGGUCGAAGUUUAAGGAAAAUGUCAAUGGUGCCAUAUAUUUAAAACCAGAGGGAAUAGCUAUGUACUACUCUCUUUUUAUUAAAAGUGCAACUAGUUAGCAGGCACAGAAGCAGUGAGGUUUUCUCCCAUCUUUCGGAGGAGUAUACCUCCCUACCACUUAAGAGGCAAAAAAAUUAAAAUGGCUGAUCUAAUCAUAACAAGAGGAACAAUUGACAAUAUUUGGCACAUAAAUAUUAAUCACACUAUAUCACAUAAUUUAAUUUGCACAGUUCCAUUGUUGCUUGACCCACACAUCGGCCAAUUGAUAUCCAACUAUCAAGUAGUAGUAGCAAACCACAAAUUCUCAAACAGUUAUUAAUACUCGAAGCGAAUUAUUGAGCAUGAGUCCUACACCCUACAAUUUAGGAGUGCUCCACUAAUAAUUCAUUGAAUGGGUUAAACACAACUAUAUACUAAAUCAUGUCAUCUUAUAAAUUUAUUAUUAAACAAGCUAUACAACUCCCACAUCAGAUAUAGCAUUGAGAAGAACAUAAAGCUUGGAAUGGCCUUACCUUACAGCUGGAUUUUAAUUAAUAAAUUGAAGCAUAUCAUUUUGUUAUAAUGACAAAAAAUGAGCAUUAUUAGUUUCAAGAAAAUUAUGUGCAUUAAUGUAAGAAACAACAAGGUUAACAUAAAUACAGAAUUGCAUGGUUGCCAAUUGGCAAUAUUUCCAGAUAGGCCUCUCGUAAAAUGCUGUAAUUUUAGGUUCCCUGUAAAAUGUAUAAUUUAGGACUAAGGGUAUCCUGAAUUUCUGAUUCUUUUUACUUCGAUAUUACGAAGGUACAACUACGAUCAACAUAUAAAAAAUACGAGUAAAUUUCACUUUGGGCCACAUUUUUUACCGAUGUUUCACUUUGGAUCACCCUUUAACCAAUGUUUUCACUUUGGACCAGGUAACCUUGCCAUUGUUUCACCUUGGACCAUCCUCAACUCUUUUAUCCAUGUACAUCUAAUUUGUCAUAUGUCAAAGAAACGGUCUACAAUAGUGAUCAAUUUGAGUUGACAUAUGACAAAUUAGGGACCAAUGGUACAAUAGUGAUCAAUUUGAGUUGAUAAAGGAUCUUCUACCUUUUUAUUUAAAUAUAUACAAACAACCAGUGCGUUGGCUGUGUGCCUUAUGGCAGAAGCCGGUGAUGUAAAAACAUUUUCAUUAUCUAAAAGAAAUAAUACAACCAGCACAGCUAUAAAUGAUACAUGAUUCUUGGGAACGCUAUUUAAAUGCCAUGUCAUCUUUAUCUAUUUGUUAGAGGAUUUUAUUUGCAUGAUAUCCCAAUUUCAUAACUUAAGGGGAUUUGUUAGCUCAUUGUAGUUGGCAGUCUCAUAGUUAUACUAAUAUUAUGACAGGUAGUUAUUACUAUAUAGAAUUGUCUGAAUAGUUUUGAUAUCAUGACAUGCUUAAUCAACUACUUUUUGCAUGAGCAAAAAUGAAUAUCACUUGCACCGCACAACAGCAUGGCAGGAGCAAAAGUAAAGAAUAUGAGCCAACAAAGGUGCUAAUAAUAGCAUUGUGCAAAUUAAAUCAAAUAAAUUGUGAAUUGUGGUAGAUGUUUUAUUUGUCAAAGUGGAACAGGAAUGCCAUUAUUCAUAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

44

LEP:

8.94%

ME_num:

361

MEP:

73.37%

HE_num:

86

HEP:

17.48%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.86

Avg Expression:

16.90

Tip: OSA-LNCN0372 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA1.049917007467683.50944337169785e-06
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.157591720651790.0245112845476142
39311 // leaf // control--/--9311 // leaf // salt-1.099325871680610.0458489042835545
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.527737975969167.77239988851325e-16
5Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"1.18304375994660.0243797279717287