Chr:
Chr1
Start:
17311414
End:
17319077
Strand:
+
Ref_name:
OSA-LNCN0363
Sequence
(OSA-LNCN0363.1):
GACCCAAUUGACCUCUAGGUUUGAUGGGCCAGGAUAGCUUCUUUGGCCCUCCCGGGGCCAAACCUGCUACGGCGAAGUCGUCCCCCUUUGGCAUAUGCUCUUCGCCUUGAGUCCUUCGCCCAUGAGGCCUCUAGCUUGGCUGCGAUUCCCUGCCUCUCGCCGUCCUUGCUCCAUAGUCUUCGCCAGGGGGGGGGGGGUUCGCCUUGACUAACCCUGACGUCUCGGGCUUGAAUCCCCAUCGGUCGCAUGCUUUCGGCAGGUUUGGUCGAAGGGUCUCAUGCCAUAUCGCCAACAUUUGGUUCUUUGCAAGUUUUGGUACUACCAACAAUUUGGUAUAAUAUCACAUUGAUUUAGCUAUAAAUUGGCUUCAAUCCAAACAAUAUCAAAGCACUAUUAAAGUUGCCAAAUGAAUUCGUAGGGCACAUUUUGGUAGCAAACCAAAAUGGCCGCUAGAUUUCAAAAAAUAUUUUAUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
21.75%
ME_num:
MEP:
75.41%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.52
Avg Expression:
2.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.088926384661 | 0.0183099166586557 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.24562805138363 | 0.00376695182587044 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.11169183474145 | 0.0107422333561672 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.04635652225135 | 0.0292772401289471 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.26083970559048 | 0.00277415053866259 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.49679743515784 | 0.00184725601287624 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.46064454443649 | 0.000170947062404702 |