Chr:
Chr1
Start:
17344588
End:
17345879
Strand:
+
Ref_name:
OSA-LNCN0361
Sequence
(OSA-LNCN0361.1):
CUGCAUGAUGGAUUUCAUUGUUUAAGUUACUAUAUUAUGCAAACUUUGAGUUGAAGUUUUGAAAGUAUGUGCUUACACAUUAACUGACUUUGUUUUAUCGUGCUUAGCAACUUACGGUAACAUUUCUUUGAGUCAGUUGUAGCACAUGGCCACUCAGUUUGUUUAACACUAAAGGCUGAAGCAGAGCCUAAAAAUCUAGCUUUUCUCAUACUAAAUGGCCCUUCUGAUAUAGCAUUGCUAUUCAAAAUAUGGUUCACUAAAUCCUGAUACAAUGAUAAGGUGACAACUUAAUUUUAGCAUAACUGUUUCAAAAAUAGUAACUAUCAAGUGAAGGAAAACAAAAUUAAAUGCAUAAUAGAUCAUCAAUGGUUUUAUAAAAUGUUGGAACUCUAACAGGUGAUUAUACAAAUGACAUCUAUAAUGGGUGAUCAUAAAGAUGGGUUAAGAACAAAAGCGACUAGAUUUGGAACCCACUUGUACCGUUGUACGAACUACAUAUUCAGAGCAGAUUUCCUUAGCAUAACUACAGAGUUAAGACCAGUUGUAGAUAGCCUUCACGUCUUAUGACUGACCUGACCAAGCAUAUAGCAUCACAUGCAUCUCUAUUGCUUAUCAGCUGGGGUUUUGUUUGCACUAUAGAAAGAUUUUCUGUCUUUUGGGUGUGGAGUAAUGAGAUACUAGUAUCAGAUAUGCCGCAGGCGGAUAGGCCCCUGCUUUUUAGCUACUCAAAGCUGGGGUUUUGCACUCUAGAAAGAUUUUCUGUCUUUUGGGUGUGGGGUAAUUAGAUAUUAGUAUCAGAUAUGCCAAAGGAGGAUAGCCCCCUGCUUUUUAGCUACUUCCUCCGUUUCAUAAUGUAAGUCAUUGUGAAACGGAGGGAGUACUCAAUAUACCCAGAACAAGAUUUCACGAACAUAUAUAUGAAGCUCAAAUGAAUCAAUGAAAGCUCACGGUCAGCAACUAUUGCAUGUUAAGCGACUUGUUAAAUCUGUAGUUGGUAUUGCUAUGCAAAACUGUAUUCCUAAUCUACAGUUUCAUUGCGUUGAUUGUUAAAUCUGUAGCACGUAUGGUUACACCAGGAGGAUGCCUGAAGUUCUACUAAGUUUCUUCAUUCCCUUCGUAACAUUUUUUUUCUCAUGAUUUUUAGCAAGCAGCUGUCCAGUUCCCAGUUCAAUCGCAACACUUGUUCCAGCCAAGGAAACGGCUCGCUAGUGAGUACUUGAGGUACCAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.24%
ME_num:
MEP:
47.15%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
1.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.34765943323281 | 0.0149434709715112 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.22597418880269 | 0.0288624856567175 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.54224517136465 | 0.0306229225142489 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.60710010984007 | 0.0260776877488868 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.02018278781577 | 0.0381307342077299 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.74175363483451 | 0.0302855615314642 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.0586007103221 | 0.0317630325498262 |