Chr:
Chr1
Start:
16588750
End:
16598692
Strand:
+
Ref_name:
OSA-LNCN0354
Sequence
(OSA-LNCN0354.1):
CGAUCCUUGUGUGUGUUUGUUUUGGCCGUGCCUGUGUCGUGCACGAGAGGAGGAAGGUGAAUUACCAUAUCUGAUUUUGGAAGUAGUCAAGUUUGUUUUGGAAAGAUAUAGUAGAUUGGAUUGGUUAAAAAUCAGUUUCCUUUUUAUCCCAUACACCAAAUUCGGCUGCCAUCCACUCCACCUCCUGGCCGAGUCCCACUCGCCCCUUUGGCCGAGUCCGACUCCCUCCCUCUCUUCCACGGUUCCGAGUUGUGUCAAACACCUUGGCGAAUUUUUGUUUGGUGUCGGUUUCGAGAUCUGUUUGGAAAAACGGAACCGGCAUAAAUUCAGCAUUCCAUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
64.43%
HE_num:
HEP:
34.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.67
Avg Expression:
13.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.55206632569501 | 0.0439923262343059 |
| 2 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.55213011773118 | 0.0446885133148509 |
| 3 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.55224676526102 | 0.0440669762524901 |
| 4 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.18237238496991 | 0.0132943686886908 |