Chr:
Chr1
Start:
16348965
End:
16363559
Strand:
+
Ref_name:
OSA-LNCN0344
Sequence
(OSA-LNCN0344.1):
UUGAAAUCCAUCGCCAUCAUCACCGUAGGAGAGGCCGCCGGGUCCGUCCCUCCCGUCGUCGCCGGCGGCGGAUCCGUGCGAGAGGGAGGGGGGCGGAGAGACAACGGGAACCAUGCGAGAGGGGAAGAGGUCGUUGGAUCCGCCCCUCCCGUCGCCGGCGACGGCGGAUCCGCGCAACAGUGGGGCGGAGAGACGACAGGAUCCAGGCGAGGAGGAGUGAAGCCGUCCCAAUCCGGAAAUGCGUCAUCUAAGAAGCUAAAUCCAGCAGCAGCUAGGGGGAAGAGAAGGCAUCAACAGCAGCAGCAACGACGGCUUGGAGCAGCAGGUGGUGGCAUGGUGGAUCUGGUUGGCAACAACUACUAGAGCAAAGGUUAGUGGAGAGCAGGAGAGUGUAUUCCUCAGAUGAGGAUGGGGCAAGAGACACAGGAAGACGGGGAGAGAGAGAGAGAACGAGAGAGUGGUGUGCAAGUGCAACAGCUCUCAUUUUCUCUGACCUCCUCGAGCUAUCCAGAAAAUGAUAGCUGGCAGCUGGUCAGGAUGGUGGUGCGCAACAGCUCAAUCUGGAUCAAAUCAACUGGCACGCCUUUGAACCCAAGAACAAGAUUUAGGACCUGCACUGGAGUUAAGCAGAUCUCUCAGGCCAGUGUGUACUUUUC
Sequence
(OSA-LNCN0344.2):
AGACAACGGGAACCAUGCGAGAGGGGAAGAGGUCGUUGGAUCCGCCCCUCCCGUCGCCGGCGAGGAGGAGUGAAGCCGUCCCAAUCCGGAAAUGCGUCAUCUAAGAAGCUAAAUCCAGCAGCAGCUAGGGGGAAGAGAAGGCAUCAACAGCAGCAGCAACGACGGCUUGGAGCAGCAGGUGGUGGCAUGGUGGAUCUGGUUGGCAACAACUACUAGAGCAAAGGUUAGUGGAGAGCAGGAGAGUGUAUUCCUCAGAUGAGGAUGGGGCAAGAGACACAGGAAGACGGGGAGAGAGAGAGAGAACGAGAGAGUGGUGUGCAAGUGCAACAGCUCUCAUUUUCUCUGACCUCCUCGAGCUAUCCAGAAAAUGAUAGCUGGCAGCUGGUCAGGAUGGUGGUGCGCAACAGCUCAAUCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.83%
ME_num:
MEP:
32.32%
HE_num:
HEP:
65.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.61
Avg Expression:
28.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.25504313797352 | 0.000455999803470132 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.36063566519541 | 2.77363862015756e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.52508051037416 | 2.91687568348663e-10 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.24471395529265 | 0.000634610034661371 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.21665932507093 | 0.00479779162365522 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.84773608747574 | 4.14937166204949e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.32560546164941 | 1.281221954733e-08 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.76367363351732 | 1.39652794086046e-41 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.50627149450506 | 3.59256688889548e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.0249978038688 | 0.000686350924136476 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.05045784033819 | 0.0178941244446363 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.32161352260805 | 0.00552829833177195 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.32153122794201 | 0.00565412823358216 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.32146571637314 | 0.0055527998096752 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.30755208025329 | 1.94360178894463e-32 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.29941205888287 | 0.0106453543597121 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.95755477639537 | 2.97638982000513e-29 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.17276432493222 | 6.39589174971323e-06 |