Chr:
Chr1
Start:
15402454
End:
15404096
Strand:
.
Ref_name:
OSA-LNCN0329
Sequence
(OSA-LNCN0329.1):
GUGAGCACCAUCCACUUCCCCUUCCCUUUCCUGUGAAGGGAUGACCAUGCUCACUAGAUCUAGCAGCCACGGCCUCCCUGGUGGAGAAUUUGAUCGCUCGGAGCCGAGAAUGAACGCAAGGGGCUAGCAUAUAUAUAGGAGGCUCCUCGUUAAUGAAGAUGUCGACCACACUGGUGGAUUUGAGGACGUGCCAACCUCCGCAGCCACAAGCCCGCUCCUCGAUCUACCCCUUCCUCCCUCCCCCCCCCCCCAACCACCACUCUCUCUAUAUGAAACGUAUAGUUCUUUUUUUAGAAGCUUAGGGCGGCCAUAGUAAUCGGUGGAUCCAGGCCAUGGCAGCUGACGGACCCGAGGGUGAGGAGGCAACAGUUUCUACCGAUGGAUCUGUUGGCUCGAUGUGAUCUUUGUUGAAUUCAAGUUAAUAUACGAUUUGUUGAUUUAUGGUGAAUUAUUUUGUUGUGAGUUGAUGCAUAGUUGUGGAUAAUUUGUUGGCUUGUUAUGAAGAUUUGUUGAUACAUAGUAGUGGAGGAUUAUUUGAGUUGAUGUAUAUAUAGUUGUAGGUUGCGUUGUACGAUGAUGUUGCUUAUCUGUUGAAUUGAGUUUAAAUUUAAUGAUUCUAGUUGGUGUGUAAUAGCUGUUGCAAGAGAAAAUUUGCUGAGGCUUGAGCCCAUGGCUGUACUCAGUUUAGAAUGCAUUUUCUCAGGCAGGGUCAGCGGCAGCGCAAUAGUUCCUGGGUAAACAAAAUCGUUUGCCAUAAGUCAAUAUUUCGGAUUUAAGAGCCCAAUUCACAUCUUCACCUGGCUCUUUCUAUUUUAUUCGAAGUAGAAACUUCAGGACCUAUUUGACCGGCCCUUAAUCGAACACUUCUUUUUACAAAUUAACAACGACCUUAUGAAUCCUAAAUAUAUACACAUAUGUGUGCUACAGUAAUUGAACAGAUAAUAAUUCUAUUAUGUACAAAGUACAAACAUGAUAACAUGCACCAUUAACAGUUAACCAAAGUUUAUCUUGUGAGAACUGGAGAAAUGUUUAGCCGCCCCAACCAUCCCGCCGGCCGCAUCAUACCCGGCGUGGCCGCCCGAGCCGGAGCCCGCGGCCGCCGCCUUUGAGGCGCCCAAGCACGCGAACCAAGACGCCGACGACCAGAAACCAGAGCCGGAUUUCUUCUUGCCUCCCAUGGCUAAUAAUCAAAUUAACACGAGGGGAAUUAACAAAGCUAGCUCAACUAGUACGUAAGUGACAGUGUGUAUGUCUUAUUAAUGCUCGCUUAAAUAGCUUAGCUACUUGAUGAGCACCGAUCGAACUGACUACGGAAUGUUUUUCUUUUGCUGAAGGAGUUGCAGUUACUGGAGGCUUUAUAUAGGAUGCAUGCGAGCAGCUGAGGUAAUUAAGCUGGAAGCUGCACACUUGCUUCGUGCUUAAUUACUUGCUUGGCGACCAAGCUGCAAGUGAGAGAAUCAGAGAGAGACCUGCAGUGUUCUGACUUCUGACUCUGAGGAUCGAGAGAUGAUCUUGAAUUAUAAUGUCGCUAUCACUUGACCUGAAACUUGGUCAUGGUCAGUUAAUACUCGGUAUAUAUUUAGUUUCACUUAAAUCAGGAAACGUGUACAAUUCAAAUUAUGCACUCUUGUGCACACCUUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.43%
ME_num:
MEP:
29.27%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
13.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.50890776591077 | 0.00089113399941494 |
| 2 | Azucena // root // control--/--Azucena // root // Al | 2.07061159821802 | 0.00029006868733457 |
| 3 | AzuNIL // root // control--/--AzuNIL // root // Al | 2.5485176263287 | 0.0343126407609629 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 8.36087643877166 | 1.12440753576561e-59 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.68755041405042 | 0.000304696171739211 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.63106857828486 | 0.043705234055716 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 6.85909802457341 | 6.54785413708232e-57 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.99714782292007 | 9.19467426484219e-05 |
| 9 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.3750196163605 | 0.0262888333182569 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.00727976997694 | 0.0211648221639578 |