RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0305

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

14455693

End:

14458074

Strand:

-

Ref_name:

OSA-LNCN0305

Sequence
(OSA-LNCN0305.1):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUAAGCCAAGCAGACCAACACUCUUGAGACUGGCCUGAAGGGAAUAGUGUUGACCUAAGCUAUGUUGUUUCUGCAGGUUCAAUGUACUAUAUAUAUCACAUGGACGGCAUUUUCCAGCACUCUCCUAACACACGGCAUUUUUGUUUACAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUCUAAAGUUCUUUUAUGUGAUAAUCAAUUGUAAUUGAUAAAGUAUGUAUCUACUCCACUACGUCCUCCCUAAUUUAUGGACGACACCAUCAUAGACAAACAUUUUUUUGUUGGCUAUUUAUGGAUUAAUUACCUUCACAACUACUUUGUUAUUUUUAGCUUUUCUUUUGUUAUAAUUACACUAUAUCUUUUGUAUUUGCAAAAAGCACAAUAGGAUGUUAAAGCUGCUGCAACAUGUUCAUACCUUAUAAAGUAUGUUUUUUUACAACAAGUGUUUAAAUAUCCCGCAGCAAAGCGCAUGGUAUCAUCUAGUUUAAUAGUGGAGUAAGUACCGGCUCCAAUUUACAUCCAUGAGCGUCUUAACAGAACCAUCGUGUGUGUGGGACCACUAGGUUUGCUCCCUUUGGACCAUAUGGGAAUAUUGACAUGCAGCGGUCUAGUGAUUGAGUUGGGGUAUUAGAGCAGGUACAAUAGCAGGCUAUAAGCCAGCUGUAAAUAUAUUUUAAUGAGAUAAAUAAGGAGAGAGAAGGGCAUCAGGCUACAGAUUUGCAGCCAGCUAUAGCACGGACUCCAAGACGCAGUGUGUAUAUGACAGGUGGGACCAGGUAUUAAUAGUGAAGUAUGUAACUAUUGUAUGAAUGAGCUAUUAGCUUGACUAUAGAUGAAUUGGAG

Sequence
(OSA-LNCN0305.2):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUAAGCCAAGCAGACCAACACUCUUGAGACUGGCCUGAAGGGAAUAGUGUUGACCUAAGCUAUGUUGUUUCUGCAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUCUAAAGUUCUUUUAUGUGAUAAUCAAUUGUAAUUGAUAAAGUAUGUAUCUACUCCACUACGUCCUCCCUAAUUUAUGGACGACACCAUCAUAGACAAACAUUUUUUUGUUGGCUAUUUAUGGAUUAAUUACCUUCACAACUACUUUGUUAUUUUUAGCUUUUCUUUUGUUAUAAUUACACUAUAUCUUUUGUAUUUGCAAAAAGCACAAUAGGAUGUUAAAGCUGCUGCAACAUGUUCAUACCUUAUAAAGUAUGUUUUUUUACAACAAGUGUUUAAAUAUCCCGCAGCAAAGCGCAUGG

Sequence
(OSA-LNCN0305.3):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUGUAGGUUCAUCCUCAGUCCAGUUAAAUAUAUAAAUCUCCCUUUAUAAUCUGUAUUUUGAUUCAUGCGGAUUGGGCCAUGUUUCGAAUAGUCUCAAUAGUUUAUAACAUCCCCAUGAUUAUACUUUUUAAUGGUGUGUACCCCCAUCCUUUUCUCUCUUCCAUAUUUUGUGUGUCUCUCCCUUAGAGCACUAUCUGUGCCCGUGCAAAAUCACUUCCUUCAAUCUCUUCGCAGGAUUACCUCUCUUUGCAGGUUUAUUCCGGGAGGAUUACAAGAAUUCCCUUCUUCUUUUGAUUGCUAACUAUACAUUUCCUAUCACGCUCCUAUGUUUUUUCACAUGACUUUGCAAUUGUCCCACUGAAUUAUAUUUUGUAGUUGUUUAGUAUUCUCUAUUGUACAUGGAAAACUCUGCGUAAACUUAUUUAAUUCUAUCACUUAGAUAAUUCUUUGAACCGAGCAUUUUUUUUGAAAGGGAAAUCGAGCAAAUUUCAGUGAAGCAGUGAUUUCAUAUGCAGCUUAUUUUGUAAACAUGAUGUAUCUUGAGGUGAACAAUGAGAAGCCAAGCAGACCAACACUCUUGAGACUGGCCUGAAGGGAAUAGUGUUGACCUAAGCUAUGUUGUUUCUGCAGGUUCAAUGUACUAUAUAUAUCACAUGGACGGCAUUUUCCAGCACUCUCCUAACACACGGCAUUUUUGUUUACAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUCUAAAGUUCUUUUAUGUGAUAAUCAAUUGUAAUUGAUAAAGUAUGUAUCUACUCCACUACGUCCUCCCUAAUUUAUGGACGACACCAUCAUAGACAAACAUUUUUUUGUUGGCUAUUUAUGGAUUAAUUACCUUCACAACUACUUUGUUAUUUUUAGCUUUUCUUUUGUUAUAAUUACACUAUAUCUUUUGUAUUUGCAAAAAGCACAAUAGGAUGUUAAAGCUGCUGCAACAUGUUCAUACCUUAUAAAGUAUGUUUUUUUACAACAAGUGUUUAAAUAUCCCGCAGCAAAGCGC

Sequence
(OSA-LNCN0305.4):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUGUAGGUUCAUCCUCAGUCCAGUUAAAUAUAUAAAUCUCCCUUUAUAAUCUGUAUUUUGAUUCAUGCGGAUUGGGCCAUGUUUCGAAUAGUCUCAAUAGUUUAUAACAUCCCCAUGAUUAUACUUUUUAAUGGUGUGUACCCCCAUCCUUUUCUCUCUUCCAUAUUUUGUGUGUCUCUCCCUUAGAGCACUAUCUGUGCCCGUGCAAAAUCACUUCCUUCAAUCUCUUCGCAGGAUUACCUCUCUUUGCAGGUUUAUUCCGGGAGGAUUACAAGAAUUCCCUUCUUCUUUUGAUUGCUAACUAUACAUUUCCUAUCACGCUCCUAUGUUUUUUCACAUGACUUUGCAAUUGUCCCACUGAAUUAUAUUUUGUAGUUGUUUAGUAUUCUCUAUUGUACAUGGAAAACUCUGCGUAAACUUAUUUAAUUCUAUCACUUAGAUAAUUCUUUGAACCGAGCAUUUUUUUUGAAAGGGAAAUCGAGCAAAUUUCAGUGAAGCAGUGAUUUCAUAUGCAGCUUAUUUUGUAAACAUGAUGUAUCUUGAGGUGAACAAUGAGGUUCAAUGUACUAUAUAUAUCACAUGGACGGCAUUUUCCAGCACUCUCCUAACACACGGCAUUUUUGUUUACAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUCUAAAGUUCUUUUAUGUGAUAAUCAAUUGUAAUUGAUAAAGUAUGUAUCUACUCCACUACGUCCUCCCUAAUUUAUGGACGACACCAUCAUAGACAAAC

Sequence
(OSA-LNCN0305.5):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUGUUCAAUGUACUAUAUAUAUCACAUGGACGGCAUUUUCCAGCACUCUCCUAACACACGGCAUUUUUGUUUACAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUC

Sequence
(OSA-LNCN0305.6):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUGUAGGUUCAUCCUCAGUCCAGUUAAAUAUAUAAAUCUCCCUUUAUAAUCUGUAUUUUGAUUCAUGCGGAUUGGGCCAUGUUUCGAAUAGUCUCAAUAGUUUAUAACAUCCCCAUGAUUAUACUUUUUAAUGGUGUGUACCCCCAUCCUUUUCUCUCUUCCAUAUUUUGUGUGUCUCUCCCUUAGAGCACUAUCUGUGCCCGUGCAAAAUCACUUCCUUCAAUCUCUUCGCAGGAUUACCUCUCUUUGCAGGUUUAUUCCGGGAGGAUUACAAGAAUUCCCUUCUUCUUUUGAUUGCUAACUAUACAUUUCCUAUCACGCUCCUAUGUUUUUUCACAUGACUUUGCAAUUGUCCCACUGAAUUAUAUUUUGUAGUUGUUUAGUAUUCUCUAUUGUACAUGGAAAACUCUGCGUAAACUUAUUUAAUUCUAUCACUUAGAUAAUUCUUUGAACCGAGCAUUUUUUUUGAAAGGGAAAUCGAGCAAAUUUCAGUGAAGCAGUGAUUUCAUAUGCAGCUUAUUUUGUAAACAUGAUGUAUCUUGAGGUGAACAAUGAGAAGCCAAGCAGACCAACACUCUUGAGACUGGCCUGAAGGGAAUAGUGUUGACCUAAGCUAUGUUGUUUCUGCAGGUUCAAUCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGGUUGAUUCAUCUUAACAUUUUACACAAUAGCUUUUUUAUAUUGAUUUUGUGAUUUUCAAAAUUUGGUAAGUGAAUUACCUUGCAAUGAUAGCAAUUUUUUCCCAUAAUGAACCAUUUGGUC

Sequence
(OSA-LNCN0305.7):

GUGGCAGGGAGCGAAGGGUUGCGCUCGCGCCUAGCUGGCUGCCCGCUGCCCACUACCGCCUUUUAAUCUUCACCUUCUAAUAAUCACUGCUUGCAUUGAUUUGCCUCCUCCCCUUCUCAUCUUUUUAUAUAUAACGACACUCAUGCCGGUGCGUGCUGCUAAUUACUCAUGCCGGAGUAGUUUGAUUCAAGAAGAGAAGUUUGAUUGAAGAAGAGAAGUGGGUACCUAGGUUGAUGUUUCUGAUCUGCGAAAUAAGCAUGUUCCUGGAUCCAUUACUCUGCUACGAGGAGGCUGUUCCUUUCCAUGCCGAUAUCCAUUUUUUCCAUUGGAAAUCGAGCAAAUUUCAGUGAAGCAGUGAUUUCAUAUGCAGCUUAUUUUGUAAACAUGAUGUAUCUUGAGGUGAACAAUGAGGUAAAAAAUUACUACAUACAAUUCCUUGGUUAAAAAAAAUAUCAAAAGCUAUGUUAUCAUUCAGAUAUCAUGGUAAUUUGAUAAUUUCUUAUUGUUGUGCAGCAUUGUUUUUUUUUACGCAAUUGUUUGCAGCAUUGUGAUUCAAUAGAAUUUUGCGUGUGAUCGUUCAGGCUUCACCUUGAUCUAUUAUGCUCCUGCCUCAGUUCAUAUUUUUAACUAAUAAACGUAUGAUCACAAAAUUAUCUCUAUUGAUUCAUCUAUUCAACCCGUUUGCCACUACCAUGCAUGAAAACGAAACGGCCUUAAAUUGUGUUACCGUUUCAUUCUAUAAAAUUGAGUGAUGGCAUCCACUGAUUCACAUGAUACUGAUCAAGGAAACUGUCAAUGCAGAAGCCAAGCAGACCAACACUCUUGAGACUGGCCUGAAGGGAAUAGUGUUGACCUAAGCUAUGUUGUUUCUGCAGGUUCAAUGUACUAUAUAUAUCACAUGGACGGCAUUUUCCAGCACUCUCCUAACACACGGCAUUUUUGUUUACAGAUAUUAAUUGUUGUUUUGUCUCCAUUGCCACUAUGCAGCUAAUCCGGCCAGCAACCAUUGCUAAUCGGCAACUCCAUUGCUAAUCGCAUGUCAUUGUGAAACCUUUUGGAUUAUUUGCCAUACAUUUUGGUGCAGACAUGUAGCAGUGUUGAUCACAAAUCAUGUUAUUGUAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

411

LEP:

83.54%

ME_num:

55

MEP:

11.18%

HE_num:

25

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.92

Avg Expression:

10.15

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl-2.638173048114930.00838940205783699
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS2563.934584791368366.23091570182129e-05
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP22863.882833809777190.000483553159968915
4BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs2.73676659814717.52927153639611e-07
5Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl-3.002329707260050.0427263818123575
6Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-5.257099660226610.0152325283319657
7Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-4.509462344810390.0429695946196411