Chr:
Chr1
Start:
14232786
End:
14233525
Strand:
+
Ref_name:
OSA-LNCN0301
Sequence
(OSA-LNCN0301.1):
AAACAGUUUCAGCUCCACCAAAACUGGGAGUGGAGUUGGGUGGAGCUCUCUCACAAAAUGUACUAGAGUUGUGGAGCUGGGUUUAGGCAGCUCCACAACUCCACUCCAGACUCAACUCCUGGAGUUAUAUAUAGGAGUUGGAGCUCUACCAAACUCCAUGAUCACAAAAGGCAGUUGGCAGUGAACUAAUCACAAUGAUGUCUACAUUUCAGUCAAACAGUAUGGAGCUUGAAACUACACAUGUUGAAAUGCAAGGUUGAGGCAAGGGAAAUCCAUCAGAUCAUAGACGGGGAAUACAUGGGCCCAUUUUUCUGGAUUCAGUACUUGCUACAUGCAGAGAAAGGAUCAAGUCGUGCAUAGCAUAACUUGACUGCAUUGGAAGUUUUGUAUACUGUGAGAAUAAUUUUGAGGACUCUGUAGAGGCAGUUACCGACUGAAAUUAAAACUGAUUACUCCAAAUCUACGUAGCUUAUUAAUUUGCUUAGGAUUACAAACGAGACGGGAUUGAAGGGGCGUGUGCUUCAGAUUAAUUUUCCGUGUCGAAUUGAAUCUUAGCAGCAGGGGCGGAUCCAAAUUGGUUAACGCAAACAAAUAAACUAACUAACUAUGAGAAGAGCAUCAUCCAGAUCUAGAACAGAAGCUAUAGUUACUGCAAGAAAAAAAAUGGGUGGGAUCUAGAGAGAUGAAUGAGAAAGAGGAUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.27%
ME_num:
MEP:
19.72%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.87
Avg Expression:
1.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.65069358450118 | 0.0251841407275631 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.47611486739529 | 0.0451478607778445 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.71671675115794 | 0.0115246411170779 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.60434489790889 | 0.0149679512652391 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.0940860882687 | 0.00205211141682927 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.32918533484165 | 0.0470430136655661 |