Chr:
Chr1
Start:
13621156
End:
13621952
Strand:
-
Ref_name:
OSA-LNCN0292
Sequence
(OSA-LNCN0292.1):
ACCUGUAUAAAAAUCCUUGUCUCCAUCUCUUUUACCUCAGUCUCGCUUAUAUCCUAGUACCAACGAUCCUCAUACUAUGUAAAUACCGGAAUCGCGACAUCAAACGUCGACAGUGGCGCGCCAGGUAGGGGAUCUUUUGGUGCUUCAAGGUUUCGACGAGAUGGGUUUAAGAGAUGGAUUCUCCGACAACAUACUACUCGAUAACUUCGGCUAUGGAGGAUCUAACCUGACCGGAGUCCGUGCCCCGACAUGAUCGGGACCAUCAUCGUCAACAACUUGGUCUAUCGAGAUCAUUCAAGCCUCAAGCUCCGCGGCGUACCAAAAGAUGUCAGAUCACAUGAUAUCGAACGAGUACGCAGCAAGAAAAUAUUUUUAGGAACAAUUGAGCACUCGAGUAGGUUGUGGUCGAGUACACCCCAUUAUCGAGAACGAUCUCGACAAAUGCAGAGUCGUCGCGCCCAACCUGCCAACGAAGACCGACGACCUAUCUCAUAGCACCGGCCAUGGUUGGACUACUCGAGAAAAGGUUGUUAACGGAUAAUUCCUCGCGAACGUCGUUGGCUUGAUCACCCGACAUGAUUGCAAACGGACAUCCGGAUAUGCUAUAAGUUGGGUAUGUGAGUCAUGCUGGCCACAUGAGAUGCACAUGUAAUAAACCAACUCUAGCACCUCCAUUGGUGUUCGAGAGAUAAUUCUACUCGCUGGUUCUUGAACCAGUAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.62%
ME_num:
MEP:
9.55%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.81692589801111 | 0.000640325029039334 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.64228688672871 | 0.00530029413479906 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.88635867980324 | 0.0167751092418 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.44346030675609 | 0.0389987971695268 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.40051355248302 | 0.0255780169970044 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.81316833577878 | 0.0030839511907419 |