RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0281

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

13345118

End:

13349405

Strand:

+

Ref_name:

OSA-LNCN0281

Sequence
(OSA-LNCN0281.1):

ACCAGAACGAACGCAGGUAAAUUUGAAUUUCUGGAAGAACUGUUACAAAUCGUCUGUUAACUUCUGGAAGAUGAACAGUAUACGAUCAGGCUGAGAAAUUAUUACCUGAUGCACACAAUGGCACAACUCUCCUACUCCUAUCAAUCAUAUCUUAAUUCAUUGAGAUUUGUUAUGGUCCAGCAGAUAUAGUACCUUGAGGUACUGGUACCACCAGAUACCAAAUAAAAUCAUGCCGUUGAAUUACAAUGGGCACGAUUGGAAACGGGCUGAAAAGGGGCGGAGAAGACCCGCGACACAUUUGCGUACAGACGUUGCCGCAAUCUCCUCGUUCUCACCUGCCAACGCCAAUCUCCUAGCCGUCGUGCGCAGGUCUCCUCCGUCAUCGCCGCCAAAUCCUCGAUUCCACGCCGCCCCCUCUGGUGCCGAGGGCAAAUACUGCUGCCACAUAGCGCAGCAGGGACCGAAUACUCUCUAGUUGGCCUCAACUUCACCCGGUGAUUUUGGGAAAAUUUCAAUUCAAGGUUCAUACAUCGGCAAGGUGUACGGCAAUAUCGCAUCAUUGAGGUGGUCAGCUUGAUUGCUCCGCCGAUGUUGCUGCUCACGCCGGGCCGUGACUUUUUCUAGUGGCAAAUCAAACUAUCAAUACAGAGUUGUGUAUAUGUCCGCUUAAUGAAGAAGUUGCAGCGCCGUUGGCAGGGAAACAAUGGAGGUCAGUCGGUUAGGAGAUUCCUCCCAAGUCCGUUGCCAGCGUAGAACGAGGGGUCUCCGCUGCUGUUGGCCGCUCCCAUGGUCACCGCCUCCGCUGUACUAGUGCUGGCCAUCGGGGAGGAGGGAGGAGGAGGAGUUCAGGAGAUCUCGAUUUGGUGCUGCUACUCUGGACGACGGUGAGGAAGUGAGGUGAUCUAGCACGACGACGGUUGGACUCGGCGAGACUCCGCCACCCACCCCGGCGUCCAGCUCGCAGGCAAAGAAGAGGUCCUCCCCUAGAGAUGGCAAGCCUCGAAUGGACGGCCGCGGGAGGGUAGGCAGCUUCAUCUUCCCUGCUUCGUCUCCACUCGUCGUCGGCUUGCUUCAGCUUAUAUCCAGCGGCCUCCCUAUCACGAUGCAGGGAGGAGACGGCGAGGCCGCCCCCAUGGCUUCGCCUACUGGUCUUCCGGCCUGCCUGACCGUGCGGGGCGAGCCCUCGGUGCCGCGCGGAGACGAGGGAAGGGCGAUGAGGACGGGGCUGGAACGGUGGCGGCAACAGGUCCAGUCGCUAGCUUGCAUUGACUCCAACAAUCGCUAAUGCGAAAAGACAACCUUACCCUCUCACCUCUCAAUCAUGAUGCGGUACCCUCCCAAGUACCUGGCGGUACCGACGGAUGAUAGCUGUUGGAUCUGAUCCAAUCGAUGGCUAAGAUUUAGUACCGCCCCAAUCUAUUGGACUGUAAAAAAAACUCUAAUUUAUUUUAUAACCUAA

Sequence
(OSA-LNCN0281.2):

ACCAGAACGAACGCAGGUAAAUUUGAAUUUCUGGAAGAACUGUUACAAAUCGUCUGUUAACUUCUGGAAGAUGAACAGUAUACGAUCAGGCUGAGAAAUUAUUACCUGAUGCACACAAUGGCACAACUCUCCUACUCCUAUCAAUCAUAUCUUAAUUCAUUGAGAUUUGUUAUGGUCCAGCAGAUAUAGUACCUUGAGGUACUGGUACCACCAGAUACCAAAUAAAAUCAUGCCGUUGAAUUACAAUGGGCACGAUUGGAAACGGGCUGAAAAGGGGCGGAGAAGACCCGCGACACAUUUGCGUACAGACGUUGCCGCAAUCUCCUCGUUCUCACCUGCCAACGCCAAUCUCCUAGCCGUCGUGCGCAGGUCUCCUCCGUCAUCGCCGCCAAAUCCUCGAUUCCACGCCGCCCCCUCUGGUGCCGAGGGCAAAUACUGCUGCCACAUAGCGCAGCAGGGACCGAAUACUCUCUAGUUGGCCUCAACUUCACCCGGUGAUUUUGGGAAAAUUUCAAUUCAAGGUUCAUACAUCGGCAAGGUGUACGGCAAUAUCGCAUCAUUGAGGUGGUCAGCUUGAUUGCUCCGCCGAUGUUGCUGCUCACGCCGGGCCGUGACUUUUUCUAGUGGCAAAUCAAACUAUCAAUACAGAGUUGUGUAUAUGUCCGCUUAAUGAAGAAGUUGCAGCGCCGUUGGCAGGGAAACAAUGGAGGUCAGUCGGUUAGGAGAUUCCUCCCAAGUCCGUUGCCAGCGUAGAACGAGGGGUCUCCGCUGCUGUUGGCCGCUCCCAUGGUCACCGCCUCCGCUGUACUAGUGCUGGCCAUCGGGGAGGAGGGAGGAGGAGGAGUUCAGGAGAUCUCGAUUUGGUGCUGCUACUCUGGACGACGGUGAGGAAGUGAGGUGAUCUAGCACGACGACGGUUGGACUCGGCGAGACUCCGCCACCCACCCCGGCGUCCAGCUCGCAGGCAAAGAAGAGGUCCUCCCCUAGAGAUGGCAAGCCUCGAAUGGACGGCCGCGGGAGGGGAGGAGACGGCGAGGCCGCCCCCAUGGCUUCGCCUACUGGUCUUCCGGCCUGCCUGACCGUGCGGGGCGAGCCCUCGGUGCCGCGCGGAGACGAGGGAAGGGCGAUGAGGACGGGGCUGGAACGGUGGCGGCAACAGGUCCAGUCGCUAGCUUGCAUUGACUCCAACAAUCGCU

Sequence
(OSA-LNCN0281.3):

ACCAGAACGAACGCAGGUAAAUUUGAAUUUCUGGAAGAACUGUUACAAAUCGUCUGUUAACUUCUGGAAGAUGAACAGUAUACGAUCAGGCUGAGAAAUUAUUACCUGAUGCACACAAUGGCACAACUCUCCUACUCCUAUCAAUCAUAUCUUAAUUCAUUGAGAUUUGUUAUGGUCCAGCAGAUAUAGUACCUUGAGGUACUGGUACCACCAGAUACCAAAUAAAAUCAUGCCGUUGAAUUACAAUGGGCACGAUUGGAAACGGGCUGAAAAGGGGCGGAGAAGACCCGCGACACAUUUGCGUACAGACGUUGCCGCAAUCUCCUCGUUCUCACCUGCCAACGCCAAUCUCCUAGCCGUCGUGCGCAGGUCUCCUCCGUCAUCGCCGCCAAAUCCUCGAUUCCACGCCGCCCCCUCUGGUGCCGAGGGCAAAUACUGCUGCCACAUAGCGCAGCAGGGACCGAAUACUCUCUAGUUGGCCUCAACUUCACCCGGUGAUUUUGGGAAAAUUUCAAUUCAAGGUUCAUACAUCGGCAAGGUGUACGGCAAUAUCGCAUCAUUGAGGUGGUCAGCUUGAUUGCUCCGCCGAUGUUGCUGCUCACGCCGGGCCGUGACUUUUUCUAGUGGCAAAUCAAACUAUCAAUACAGAGUUGUGUAUAUGUCCGCUUAAUGAAGAAGUUGCAGCGCCGUUGGCAGGGAAACAAUGGAGGUCAGUCGGUUAGGAGAUUCCUCCCAAGUCCGUUGCCAGCGUAGAACGAGGGGUCUCCGCUGCUGUUGGCCGCUCCCAUGGUCACCGCCUCCGCUGUACUAGUGCUGGCCAUCGGGGAGGAGGGAGGAGGAGGAGUUCAGGAGAUCUCGAUUUGGUGCUGCUACUCUGGACGACGGUGAGGAAGUGAGGUGAUCUAGCACGACGACGGUUGGACUCGGCGAGACUCCGCCACCCACCCCGGCGUCCAGCUCGCAGGCAAAGAAGAGGUCCUCCCCUAGAGAUGGCAAGCCUCGAAUGGACGGCCGCGGGAGGGUAGGCAGCUUCAUCUUCCCUGCUUCGUCUCCACUCGUCGUCGGCUUGCUUCAGCUUAUAUCCAGCGGCCUCCCUAUCACGAUGCAGGGAGGAGACGGCGAGCCCUCGGUGCCGCGCGGAGACGAGGGAAGGGCGAUGAGGACGGGGCUGGAACGGUGGCGGCAACAGGUCCAGUCGCUAGCUUGCAUUGACU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

72

LEP:

14.63%

ME_num:

419

MEP:

85.16%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.74

Avg Expression:

3.82

Tip: OSA-LNCN0281 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA1.389613412124180.040118123137428
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN1.731239424642870.00335012230492503
3Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.787452020607640.00370641233538343
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.497418152443250.0219346839864409