Chr:
Chr1
Start:
12913483
End:
12919342
Strand:
-
Ref_name:
OSA-LNCN0279
Sequence
(OSA-LNCN0279.1):
GCGGAUCGAUGACGUGGCGGACGAUCGGACGGCUGCGGGGGAUCGGUUCGUGCCUUCGUGGAGGGGGAGGACUCCGGAGUCCGGAGACGGGGUAGGAGGAGAACGCUAGGGCUGACGUCAGCGUGAGGGAGAUUCUUUUUUCCCAAGAAAAUAAAAAAAAACUCUGGAUUCACGCUCUCUUCUAAAUUCUGAUUAUAGUAAACUAAAAUCAGUUGGUAUACAUUAAGAUUUAGAUUUAUCGCCCAAAAAUAAACUGUUGCAUUUUUUUAUUUACUUUCUUAGAAUGUAAACAUCCCGGCAAAUGACCUCAUGGUCUACCAAAAAUAUUUCUCCUAAUUAAACUUCUCUUUAAACAAGAAUUUUUAGAGAUAGAAUUGUACAGAGUUUUCUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.12%
ME_num:
MEP:
27.24%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
2.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.18374348553792 | 0.00308623802934286 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.42304111836405 | 0.000869505159126125 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.49002758746702 | 0.0372166644812774 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.8478885986679 | 0.0424675508871617 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.55381578546376 | 8.20737761645708e-05 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.90497140230729 | 2.23353627929926e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.86033259456236 | 0.0102888181507481 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.48441143075148 | 0.00410798768462879 |