Chr:
Chr1
Start:
12734821
End:
12735474
Strand:
-
Ref_name:
OSA-LNCN0270
Sequence
(OSA-LNCN0270.1):
AGAUAGUUUCAAAUUUUGUCGGAAGAACACUUCACAUGUCGGAAGAACAUCCCCAAAUUUGUGUAUGUGAUGUGCAUCGUGGAAUCGACGAAAUGUGAAAAGAAAAGGAAAAAAAGAAGAAAGGUUGAUUUAUUUUGGGUGCCGCGGUAUCUGGAAAAGUCUCCUGCUACAUUUACUGGGGCAGAUUGUGCAGAGGACCGGGCCGUGUGCCAUUGAUGUCUCGCACCAAUAAUUUUGGGCACUGGACGUCGCCCCCACAACCACUUGCCACUGCAGCUCAGCCUCAGCUCCCGUUGCUGCAGACGCUGUAGGAAUCGCUUUACUAUUUCUUGUGAUUCCGCUUUGAGUAGCAGUGUCACAUCUCAUCAACUUUUGUUAACUUCACCUCGACCCCCAUCCCUUUCCCCUCUUGCUUUCCCUGCGGUUUCGGCAGUUGGAUAAUACUUGAGUUUGACUGCGGUGAAAUUGAAGAGGGUGAAGUAGUAGAGUGAUGGUGAGUGGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.72%
ME_num:
MEP:
38.41%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
3.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -4.7516866980293 | 0.000639611272792253 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.13569530077165 | 0.035569787045075 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.76410610410226 | 0.00264761382085442 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.85015994729918 | 7.2728131864355e-05 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.07867233835953 | 0.00771230546379694 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.50676894216667 | 0.0118030734278285 |