Chr:
Chr1
Start:
12213886
End:
12222181
Strand:
+
Ref_name:
OSA-LNCN0263
Sequence
(OSA-LNCN0263.1):
GCGGAGGUGGGAAAAGGCUUAUAGGUGCCAGUUUUAGCGCUACCGGCACCUAUAGUGGCAACACCUAUUUGAUAUUUUGUAGUAGUGAAACAUGCAUUAACAAAAUAACGGGCACCACCGCUCACCAUUGUUGACAUCAAGGAAGCUGGAGGCUACUCGGGGAUAGGCACGGGGGCCAGAUUGAACGUCCCCCCGACCUUUGGGCCCACUGGAUCUGGUGCCGGUUCCACCGCCGUUGCCAUUGCCGAGCUUAGACGCCGUCCUUGCACGGUAGAAGGUGCCCCCACUGCUUGCGAGGGAGAGGAUGCCGCCACUCGCGAGGGAUUCGUCAUGCUGUCGCUCGCCUGUGGGAAGGGCACCACCUCCACUCACUGUCAGGGAGAGGGCGCUACUGAUACCCACACUCGUGAUUGUAUAAGGAAGAGGGAGUGGGAGCGAGUGGAGAAGGGAAAAUGAGAUGUUGCGAGUGGGCUGGGUGAUAAUAACAAGAGGCUCAGCUCGGUUUUUUUUUGUUGCUUUUAAAAAAACCGGCACCUAUAAUAUAUUAUAUAUGUCGGUUUUUUAAUUAACUGAUACCUAUAAUAUAUUAUAUAUAACUUUUUUCUAAAAUAGGCACUUAUAAUAUUGGUAUCAGUUUUUCUUUAGAAACCACACCUAUAGUUGCUGAAAGGUGCCGAUUUUAUAUUUUCCCACCCCACAGGGAUGAGAAAAGGUCUAUAGAUGUCGAUUUUAGCUAUUCCGGCACUUAUAGUGCCAUCUUUUCUAGUUUGUUUUAGUAGUGAAAAUUAUCUUUUAUUUGUUUGAAGCAAAAUAGAAAGUAUUAAAAAAACAAUUUGACCAUACAUACAAAUUGAUAAUUUGUGUUUAAACAACGAACAGUAACCAUAUAGUUACAAAUUUAAUUAAUCCAGAUCAAUUAACAUCAAAACAUUAUUUCAUAUUUGUUACCACUACUGAAAAAUGAUUUUUCAUGGUGGUUAAAAUGAGUUUUCGCAUGUGGCUGACAUUACUGUCUGAGACCAAAGUCCAGUAAUUGAUGCUGUGUGUUUUCGCUGGCAGUUGCCAACCACUUAUGCUGAUCCGUUUUUGCUGGCGACCUUCGUAAGUUCUACAACAUCUCAAUUGAUCAACAAUUCUUACUCAUGCUUUAGUAUGUUCCGUAUGCAUAGAAUACACUAAGGCACUUUCAUCCAAGCAAUUGAUGUCCAUAAACAGGAAGUUCUAAUACAUAGAUAAAUCUCAGAGUUUUGGUGUUAGGUACAUAUGGCCGACUGGCUAAAUUGUUAGCGGUUCACGGAAGAAUAUUUCUACCUAAAAGACCCUUCAUGCAACCGACUAUGGUAGUCCCUAGUUAGAACUAUCCUAGAAAACGAAAUCACCCCCAUCAAAGCAUUCGUCAUCCACAAAGGCCUCACAUGCAGUAAGGUCUAACUAAAAAGAAAUCAAGAAUACAACAAUAAAAGCAAGAGUCAGUACAACAUAAAUAAUGUACCGGCAUCGCCAACCCUAACAUACAUGCAUAGCUUUAUCAAGGAAGGCUUAAGUGGUUUAUUUUCAGCAUAAAGCAAAUUUUAUUUCACAACUCUUUUUCAAAUCAUAUUUUCAAAAAAUCAAUUUCACCAAGCAUACAAUAUCAUCAUGGCAUCAUAAGAAGGUAGAUUCAUAGAUAAAUAUUUAACUUAGUGCCCCCAUAGAUAGCAAGAUGAUAACAUCAAUUUAAUCCAACAAUUUCCAAUGUACAUAAUUCAUAAAUAGUUUGCACAAGUUUGAAAAAAAAUCAAGUCUAUACUCAACACAUGUUCCUACGUUGCUCAUAAUCGAUUAGUUUUUACUCUAUAGAGUUCGUACACUGUACCCACAUAAUGCAAAACAAAAAACAUGCAAAGCAUGGCACAUGAUACCUAAGUACCUAAUUUAUUACUCGCAACAUAGUUGUUAUUCACACUACAACAUAAACCUUAUGUAGAGUCUCUUUUGUAGAGACAAUUUUCAAAAUGCCUCUAAGUUUUGAAGCUCUAUAGUCUAUAUACACUUUUUAGAGGCACUUUCAAAAUCGCCUAAAAUAUUUUUACUCUAGAGACACUUUAGAGACAUUUUUAGCAUACUUUGUUAAAUUUAUCUUAUAGAGACAUCUUUUCGGCACUUUAAAAUUUGCUUCAUAUGUAAAGGCAUUUUCUUAAGGCAUUUAAAAUGAUGUAAAGACAUUUUUCCAAAUAUUAAUAUAUAUCAAGUAACUAGAUAUAAGUAACACAAAUCAUAUAUAAUUAUAUGAGGUUGAGAUGGUUAGUGCAUUGAAGAUAAAAAUGUUCAACUCAAGAGGUCAUGAGUUCAAGGAUUGGUAAGGAAUAAUAAUUUUUUCUUUUAUUUUCAUAUUGAUUUGCUAUAGUUGCAAAAGGCACUUAUGAGACACUCUUCAAAAUGUCUCUAUAACACUGUAAAGGCAUUUUAAAAAUAUCUCUAUAGUAUUAGGAAAAUGUCUCUACAAGGUUGUCUCUAUAACACUGUAAAGGCAUUUUAAAAAUAUCUCUAUAGUAUUAGGAAAAUGUCUCUACAAGGUAUAUUUGUUGUAGUGUCAUGAUCUAGCCUUGCACUAGCACGAUAAGUAUGGAUCCACCCUAAGCGUAUGGCUUAGAGCUGUUAGGUGGCGAGCCUAUGCCUUAACCUAAAGUUGUGGCGGGAACAAAUCUGGCGUUCACGAGCCCCAAAAAUAAGGGCUCGAUAUACCGGCUCGAAUCGAGCCGAUGCAUCGAGUGCAUCCACCCUGCAUUGCCCCAUAAUCUCAAAUCCAAAACAUCAAUUACAGAUAAUGAACUCCCGAAUCAACCAACAUCAAUCACAAAAAUUAUAGACUAUGAACUCCCGAAUCAACCAACAUCAAUCACAGACAUCACACAACAAACAUUGAAAUAAAGAUCAAAGAAAUCACAGACAUCACCGCUGCUCACCGUCAGCGUCUACCAGAUCCGCCACCGCUGCCGCCGUCACUGGGCUUCCACGGCACCCCUCCCACAGUCGGGCCACCGGGAAGUAGGGGCCGUCGCACCUACGCUGUAUGGGCCACAGCCUCCACGCCAUCCACCACCUCCGCGCCUCCCUUCCCGCUGGAUUUGGCGGAGGGACGGCACCGCCGCAACUCCCACCCCUGCCAGGCCAGUGCCGCCACCGCCGCCCUUCCUCCCGCCGGAUCUGGCGAAGGGUGGGCGCCUCUGGGUGGCUGCCACUCCUUGUGCCGACGCUGCCGCACGCUGCCUCUACCGCCGGGAGAGAAAGAGAAGAGAAUGUGAAGAGAAGAGGAGAAGAGAAGAAGAGGAUAAAAACGGUGGAGUGAGAAACUGAUGAGACCGAGAGAGAGAUACUUUAUCUCUGCUCAAUGCGCUCCCUUAUCCGCUCGGCUCAUGGCUCGUUUUUGGCUCGGUUUUUAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.89%
ME_num:
MEP:
33.94%
HE_num:
HEP:
34.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.71
Avg Expression:
14.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.48045570371931 | 0.0305977305740944 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.23517135811841 | 0.000161942655759273 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.87383649853389 | 0.000671698567122901 |
| 4 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.1513845775336 | 3.27502473848799e-13 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.09857709562379 | 0.000261408322585497 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.29848193587244 | 0.000223627645300258 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.93016991227426 | 0.000639507911929654 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.01498205398969 | 0.0141039800365773 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.08913179116691 | 0.00827572846994944 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.5915952837655 | 5.75145396559725e-20 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.11743676678674 | 0.0130442124075819 |
| 12 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.44060876559853 | 0.000202541274312353 |
| 13 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.66458639924586 | 0.000757848343140926 |
| 14 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.47845584271355 | 2.92195070144184e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.09549341829576 | 0.00942011364115054 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.39245437536942 | 0.0308698195403513 |