Chr:
Chr1
Start:
12203093
End:
12204068
Strand:
-
Ref_name:
OSA-LNCN0261
Sequence
(OSA-LNCN0261.1):
UAUAACAGCCGAUCAAAAACAACAAUGGCCAAUUUGUUUAGUACAACAGAAAAAAAUCAAAAAAGAUGAAAAAUACCAUCUUUCGUGACAUUAACAUAUACGGGCCACCAGUAAAAAACAGUUUUUGCAGAUGGCCCAAAAAGGUUUUAGCGUGCAGCUAUGGCUAAGCCGCACGCACCAAAAGGUCUACGAAAAUCACUAGUUUUGUGUGCGGUGGCUUAAGCUGUCCGCACGCGGAAAUAGAAAAUAAAAAAUAUAAUUCCAAAAUACAAAAACCUAACCCUAACCACAGCCGGCCGGCGCCGCCAUCGUCGCCGGCGGAUCAGUCUCUCCUAUCUCCACGACGUCGAGGCCAGAUCAGCGUUGCCGCCAAGGUCCGUGCCUGCUUCCACCGUGCCACACGCCGUUGGAUCCGCGCGGGGAGAGCUGCCACCGGCUUCAUGCUUGAGCCCAUCACCGGAUCUGCACCUCCCGUUGUCGCCGGCAAUGGAUCCGUGUGCGUGGAGGCUAGAUCCAUGCCGCCGCCAGAGCCCACGCCUACCGCCGCUGUGCCGCCCACCGCUAGAUCCAUAUGGGGGAGAACCGCCACCGGCCUCCAGCUCGAGCCUAUCGCCGGAUCCGCGCGGGGGAGAGCCAAGGGGGCCACUGCCGUCGCCCAUGCCAGCCGUCGCCAUAGUCGCCAGAUCCACCGCCCUUGCCGCAGUCGCCGCCCACCAUCUCAGCAGCCGCUCCCGAGGGUGGUGCCGCUGCCGGAUCCUACACCCUUCAACGCCGGAGGGGACCGCCGUGCGUGGGGGAGCAUGGAGGAGGCCGCCGCGCGCCGUUGCCCACACUCGCCGCCACCCUCGCUCACUGUGCACCUCCGCCACCAGUGCUUGCCGUCGGGAGGGAGGAGAGGGGAGAAGAGGAGCUGGGAGAGAAAGAAGAGCGGAUGAGGCUGGGAGAGAGGAUAGGAGUGGGUAUAGGAGCAGGAGAGAGAGGAGGAGUGGGUGAGGCAGGGAGAGAGAGAGAGGAGGGAGGGGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.6%
ME_num:
MEP:
10.16%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
2.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.52349680600788 | 0.000281814778596017 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.46934007356374 | 0.0144557030047232 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.65434382495098 | 0.00310440651016349 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.40196721160738 | 4.96216604981068e-18 |
| 5 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -3.89406135330866 | 0.0225349936387856 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 8.40488501235648 | 3.35863885447762e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.70927354437648 | 0.00462967355420542 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.86685375466552 | 9.59645741081876e-06 |