Chr:
Chr1
Start:
12170635
End:
12171301
Strand:
.
Ref_name:
OSA-LNCN0260
Sequence
(OSA-LNCN0260.1):
UUGCAACUUCUUUUCCGGAAGCCAAUCUCCAAAGAACUCCAGGGUUAAGCGUGCUUGGCCUGGAGCAAUUUGGGAUGGGUGACCGACCGGGAAAUUCUUCCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGACAUGUGUUGGUAUGUGAGGGCAGUCUAUGACCUAUGAAAGCUAUCAGUUGUAAGCGGGCCCGGCCUGGGGGAAGGCGGGACGUUACAAAAUGGUAUCAGAGCCGACUCUCGCGGUUUCACGGGCGCGUGUGUUGCAGUUGCGCAGGCAGCACAUGGCUGGUGUAGACCGGGAGUGGUUACACAGCAUGGCACAUGCGCUGGCACUGGACACAUGGACGUGGCCAAGAGAGGACGUUCCUGGCCUAGGGUUGAUCGACGGGGGCGUCGAUCUCUCUUAAGGGGGUGAGGGUGUAACAUCCCGGCCUAGGGCUUAAUAGGAUUAAUAGAAUACUCAUAUCAACAAGUUGCAACUUCUUUUCCGGAAGCCAAUCUCCAAAGAACUCCAGGGUUAAGCGUGCUUGGCCUAGAGCAAUUUGGGAUGGGUGACCGACCGGGAAAUUCUUCCCGGGUGCACACGAGUGAGGACAAAGUGUGCAGAAAAGACAUGUGUUGGUAUGUGAGGGCAGUCUAUGACCUAUGAAAGCUAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.55%
ME_num:
MEP:
9.35%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.89
Avg Expression:
5.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.45048381268985 | 0.00919804574611407 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.09214695028965 | 9.95296411550683e-06 |