Chr:
Chr1
Start:
10850297
End:
10868563
Strand:
-
Ref_name:
OSA-LNCN0226
Sequence
(OSA-LNCN0226.1):
CGCUAGCUUAGAAAAGAAAAGCAUUCUCGUGUGUUUGCUGCUUCACGCCGCAUCUGCUCAGUGUCACCCCCUUCUCCUUCUCAGUGUAGCUGUCGUUGCCGAAUUCAGUGCCUCCGCCUGCUCCACCAUUUCUCCCAAGUCGCAGCCUCCCCUCCUUCCUCUUCCUCACCACAGGCAUCUCCUCUCCCAUGUCAUCACUGCCGACUCUUCCCGCUCACCCCGCCGUCGCUGCCACCUCCUCCUACUCCUCCCCGUGACCCAUAGGAAGCGGUACCUGCUAUCCUUCCCACAAGCGCCUCCUCAUUAGAAACACCGGUGCCUUGAUCUUCCCCAUCCCGACAAGGAUAAGGUAGGGCUUCGGUGGCGGCCGUACCUCAUGCAUAGACAAGAACCAUAAUUAAUGGACUAUAAGCAAGCUCAUUGUUGCCGGUUGGGCUGCGCAUUUUGUGGUGGGGACAAAGUGAGCGAGAGGAUUUACACGAGUACCUCGAUGGCUCGAUGGUGACGUGUUGGGGGGCCAUCGAUCGCUGGACGGCUGGAGGAUGAUGGGCUCAACAUAAGCUAUUUUCACCUUAGUCAAGGAUGUUAGGCUGAUUAAACAUACAGUACACAUAUUCCUGAAGAUGAGUAUGAGGCCGACGAGUCCGGCUAGUGGAGGCCCAACUCUACUUUGUUCCUCUCUGGCCUGCCAACUGUCAAGUCCACAUACGGUUUUGAAAUGAACGCCACAACGUCGAGGAUUGAGGACCCAGCUAUCAGGAUAUUAUAGAUGGAUUCGUAUUUAAAUCCAAACAAAUAUGAUAUUACUUAAUUUUAUUAUUAUUGUAUAACGAUAAAUUAAUGACAUCUGUGCAUGU
Sequence
(OSA-LNCN0226.2):
CGCUAGCUUAGAAAAGAAAAGCAUUCUCGUGUGUUUGCUGCUUCACGCCGCAUCUGCUCAGUGUCACCCCCUUCUCCUUCUCAGUGUAGCUGUCGUUGCCGAAUUCAGUGCCUCCGCCUGCUCCACCAUUUCUCCCAAGUCGCAGCCUCCCCUCCUUCCUCUUCCUCACCACAGGCAUCUCCUCUCCCAUGUCAUCACUGCCGACUCUUCCCGCUCACCCCGCCGUCGCUGCCACCUCCUCCUACUCCUCCCCGUGACCCAUAGGAAGCGGUACCUGCUAUCCUUCCCACAAGCGCCUCCUCAUUAGAAACACCGGUGCCUUGAUCUUCCCCAUCCCGACAAGGAUAAGGUAGGGCUUCGGUGGCGGCCGUACCUCAUGCAUAGACAAGGUCUGAACCUCUCCAGUUCUGCUCCUUUCUCUCCUCUCAAACCCCGGCACUAAAUCGGCAAACCAUAAUUAAUGGACUAUAAGCAAGCUCAUUGUUGCCGGUUGGGCUGCGCAUUUUGUGGUGGGGACAAAGUGAGCGAGAGGAUUUACACGAGUACCUCGAUGGCUCGAUGGUGACGUGUUGGGGGGCCAUCGAUCGCUGGACGGCUGGAGGAUGAUGGGCUCAACAUAAGCUAUUUUCACCUUAGUCAAGGAUGUUAGGCUGAUUAAACAUACAGUACACAUAUUCCUGAAGAUGAGUAUGAGGCCGACGAGUCCGGCUA
Sequence
(OSA-LNCN0226.3):
CGCUAGCUUAGAAAAGAAAAGCAUUCUCGUGUGUUUGCUGCUUCACGCCGCAUCUGCUCAGUGUCACCCCCUUCUCCUUCUCAGUGUAGCUGUCGUUGCCGAAUUCAGUGCCUCCGCCUGCUCCACCAUUUCUCCCAAGUCGCAGCCUCCCCUCCUUCCUCUUCCUCACCACAGGCAUCUCCUCUCCCAUGUCAUCACUGCCGACUCUUCCCGCUCACCCCGCCGUCGCUGCCACCUCCUCCUACUCCUCCCCGUGACCCAUAGGAAGCGGUACCUGCUAUCCUUCCCACAAGCGCCUCCUCAUUAGAAACACCGGUGCCUUGAUCUUCCCCAUCCCGACAAGGAUAAGGUAGGGCUUCGGUGGCGGCCGUACCUCAUGCAUAGACAAGAUGGGCGACGGCGGCGGCGGCGGCGGUGGUGACGACGGCAGCGGCAAGCCGGCGACAGUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.63%
ME_num:
MEP:
22.56%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.84
Avg Expression:
1.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -5.36965174980548 | 0.00159625437750365 |
| 2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.52349987472117 | 0.0362357804083556 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.95533782746384 | 8.07078487031447e-09 |