Chr:
Chr1
Start:
9447021
End:
9451559
Strand:
+
Ref_name:
OSA-LNCN0202
Sequence
(OSA-LNCN0202.1):
UUUUAAUACUUACGGCCGUUAACGCCAGUUUCGUUUUCCACGCAAACGGCAUGGAGUCUCACUUUUCUCUCUCUAAUAAUUCUACUCAGCUUCUCUCUAGUUUGUUUAUCACUUGAGCUAGUAUAAGCAAAACGAAUCAAAAAUUCCCCACAUUUUCUCCAUCAACCAAGCCUCAUCGAGCACGGGUGGUCCAGGCAUGAGCACUCACGCCGCCGGCCGCCGGAUUGAGCUGCUUGUGGCGAAAACAGCGCGCGGUCGCACCGCUGGAUUCCGCUGCUUGUGGUCAACAGGAGGAGCACAAGCGUCGCCACACGCGAGCAUACCACUGCCUGUGAUCUAGCUGCAUCAAGUGCAUGAGCUUGGAUAUUGGUGCAUGAGAGCACAGGAUGCCGACGAAUUCGAACUUCUUGCAACUGCACUUAACAGUAGAUUCCAACGGCCAUCGGGUGGAUCCUUGGAUUCAUCAAGGUUUCUGAAUGUUGGCGCCGAAGUAUCAUCCAAGAUGCCAUCCGAUGGAUCCUUGGAUUCAUCAAGGUCUCCGAAUGUUGGCGCCGAAGGAUCAUCCAAAAUGCUAGUCGUUCCUGCAUUCUGCAAUUGUGAUGGCACUGAUACAUGAAUGGGAAAUUCAUCUGCCAUGGUGCCAAGAUUUGGCGGAGGCUUGUAUUAUUGUGGAGUAGCAAUAUGUGGAUUUUAAGAUAAAAUAGUUGUGUAGUCUUGCGUAUUAACCAGCUCAGUUAUUUCUCCCCGCCACCAAUUUUAUUGGUUUGCCGCCAUUUUUCUGUUAACGUCCUUAAAUUACGUUGUUUCCACCUUAAUCCUGAUGUUAAUCCUGAUGUGACACAGAACGGCCGUUAACACCGUAGACGGAAAAAGGAGCGCAAGGCAUAGAGGCCCACCAGAAAAACCCCAACCAAUUAGGAGCUGACACAUGGAAGGGAACAGUAAAGGGAACACAACACAGCAACAGGGAAGCCGCAUCCUCAAAUCAGGGGCUAUACAUAAAGAUAUACGGCAGACAACAUCUAGAAUCACUUGCUAAUUGCUAGUAUGUUCACAACAGGAACAACAAAGGCCAAACGAGAAACAUCCAGGGGUCUUGACCUAGUUCGAAGUCUCAUAUCUUCUAAUUAUUUAAUAUUAGUAGUCUGUUCUCUAAUAUUCGUGUUUUUUUUCAAAGGCCAAACGAAAGGAUAAAUAAAGGCCUCAUGCCACUUCUAAAACAAGUUAGUUUCAAUCCACUAUCUAGUAGAAGUCCGGUAUAUUGGAGAUGUAAUCGAUAGUGCAAUAGUAAAGGGUGUGUAGUUUCAACCCAAGGUCUUAUAUUCAAUUCGCAACACGCUCACAAUUUCUUCUUAAAAAAAUAUUUGAACGAACGUCUCUUCCUUCAAAUCUCUUUUCUUUUUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.86%
ME_num:
MEP:
61.18%
HE_num:
HEP:
9.76%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.84
Avg Expression:
9.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.23279330876 | 9.09895405413169e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.60779322209527 | 4.78550467368133e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.13851512359634 | 3.72326883900596e-20 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.39701839893717 | 8.20515904331814e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.63193177892776 | 1.95350687377753e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.60391190539342 | 5.91498441265961e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.93541135307665 | 0.0487272744710911 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 1.71228208618225 | 0.000499421749457064 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.97076806597271 | 8.83770492052219e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.84924346854711 | 5.10126288403691e-17 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.13261668738785 | 0.00550923719133386 |
| 12 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.47047685601232 | 0.0021573334694336 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.70014657296876 | 0.00514848460258426 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.86237365726201 | 6.07880722977812e-07 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.88410935541941 | 2.69031100727178e-08 |