Chr:
Chr1
Start:
9125412
End:
9133733
Strand:
+
Ref_name:
OSA-LNCN0194
Sequence
(OSA-LNCN0194.1):
GCACUAGUAUUCUACCAAUAAUAUGCAUGUGGUUUCCCUCUUAAUAGUACGACAUUCCUACGACACAAUGUAAGGUAAAAGAUACAAUAUACCAUUUGAUCAUUGCCACAUUGCAUCGUGAUGUCGCAUUCAUGGAGUAUGCAUCUCAUUACAACAUGUCGAGGACAUAACAACCUUCACAUUUGCUUGAAUAAAAGUGUUAGUCCUCUCUAAUCGCAUUGUAAUCAAUCAUCAAAAUUAUUAGGGGCCUAGAUGCACUUUCAGAGUUCAAGGGGCUUCAAACUUUUACAACUCACGUAUCAUCAGGGAGACAACACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.55%
ME_num:
MEP:
30.69%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.81
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.42755153082715 | 0.00899107439086454 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.67650521049177 | 0.0466127066181235 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -2.51969517804782 | 0.0156443839486058 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.91245108694479 | 0.00167090757224908 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.04975450643854 | 0.0163053644844541 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.46276836583537 | 0.0203426011498285 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.28079458953957 | 0.0278237233145551 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.6590671909669 | 0.0135048468993477 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.00319223195655 | 0.00598542602139442 |