Chr:
Chr1
Start:
9104360
End:
9105211
Strand:
.
Ref_name:
OSA-LNCN0192
Sequence
(OSA-LNCN0192.1):
UAAGACAGAUCGCAACGCCGCGAGACAUUACGGAUCACAACAUAAGACAAAUCUUAUCUUAACUACUUAAAAAUUUGUAAUUUUCUGUUCAUCACAUCAUUUUUCAUCCGUAACAUCAAUUUUUUUGUCUGUAAAUCCGAUUGAGAUCCAAUCAGACAAUCCAAAGAAAGAGAAAACGAAUGGAAAAAAAAAAACCCGCAUAAAUCUUAUCUCAAUCUUUGUCACCGCCAGAUCCACCCACGGGAAGCCACUGUCACCAUCGGAUUGGCCUGUGGGAAGCCGCGUGCCGUCGGCGCCAGAUCCGCCAUCGACGACGCUCGCGGGAAGUCGCUGUCGCUGUUGGAUCCGGCCGUGGGAAGCCGCGGAGGGCGCCGCUGCUCGCGGUGGGGGACGGCGCAGCUUCACUCGCUCGCAGUGGGGGAGGGCGCCGCCGGCAAUGCUCGCGGUGGGAGGGGGAGGUCGCUACCAUCGCCUUUUGAGAUAGAGAGAGAGAGCAAGGGGAUCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.79%
ME_num:
MEP:
9.96%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
17.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.38405977919129 | 0.0334573307754707 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.49409867854856 | 0.0264303597480981 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.40818688262149 | 0.00663580924217526 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.19716956720034 | 0.0373877763941518 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.67379662706889 | 0.0188291412670014 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.81210535634016 | 0.0112926687294896 |