Chr:
Chr1
Start:
8729033
End:
8730032
Strand:
+
Ref_name:
OSA-LNCN0186
Sequence
(OSA-LNCN0186.1):
CCUCCUCUCAUUAUUCGCUGUGCCAGCUAUGGUUAAUUGCCAAAGAUGAAAUUAAGCAGCUAGCCGGGAAUCGCCGGCGGCCUGACAUUGGGAUCGGAGGCCAUGGUGCAGCCAAGGAUGACUUGCCGAUCGAUCGAUCUAUCUAUGAAGCUAAGCUAGCUGGCCAUGGAUCCAUCCAUCAAUUGGCAAGUUGUUCUUGGCUACAUCUUGGCCCCUGCUCCUCAUGUAAGGCCGGCCUGUGGCGACGACGAUCGAAGGCGAGCGCUUCAGCUUUGUUAAUUAGCUCUUGUUCUUGGCCAAAUCCAACGCAAUUUUGCAAGCCUAAUCGCAGUGUCAAUUCAAAGAUAAGAUACGCGCGAUGCUACGUGUGACGUACGUUGUGUUUGUGUCUCUCUCGUCGAUCUUAUCUGAACAAUCGAUCGAUCUGUGCGCGGCGAUCGAGCACGUAUACGUCCAGUCCUUGAUGAUGAGAUUACAGUAGUAGCUCCUAGAACCAUUUGCUUCUCUCUGAAACGGACAGCUGAUCACUUAUCCUGUGUAUGUAUUCAGUAUACACGUUGAUCAUGAAAUUAAUUUGCAAGUUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.65%
ME_num:
MEP:
7.72%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.96
Avg Expression:
5.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.08085679880515 | 9.45475665809303e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.21016236058559 | 0.00436969249409899 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.04430542889776 | 6.06320639557891e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.62771395279566 | 1.00468676820963e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.19152673236271 | 4.67034563636275e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.1707664587179 | 0.00795670063265687 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.45950096615416 | 0.00122532063651918 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.69924421345634 | 0.0231344325838045 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.58265684908213 | 6.74818423520687e-10 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.43084619494947 | 0.000142432714243929 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.35666777156673 | 1.55147336853055e-05 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.38414454450506 | 0.00476776749022915 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.23749115504873 | 0.00193551189137287 |