Chr:
Chr1
Start:
8626710
End:
8629173
Strand:
-
Ref_name:
OSA-LNCN0183
Sequence
(OSA-LNCN0183.1):
CAUCAAAAGAACCACUUACUCCAUGUACAGACAAAAUAGAGAGCAUUUGAUAUUUAUUUGAUGUAUUCUUCCAUAGCUGGCCAAAACAUGUCCAGCUGGAUACUAUAUUACAAAGCAAAAUAACAACGUGGAAUAUCACCAACAUGAUUUGAACCCCAAGGAGUUCGAAACCAAUACCAAUCUGUCCUUGGGAAUGCUCCCAAUCAUCACGAUGUGGUCGAUCCACAUUCCAGCCUGCAACUGCACCAAAACACAUAAACACAAGAAUGAGAGCAGAAACAUACAUCUUGAAUCAUGCCGGACCAAACCAAAACCAAAAGUAAAGAUUUCCAAUAGUUGUACAAAAUCAGUCGCACGGUGCAAAGAUACCGGCCGCAGGUUGCUGGCUGCUGGGUACCUGGCAUCGGGCACUGGACAGAGGCCGCAGCAAGAGGUCGAGCCAUCUACACUAGAUGUCUUCUCCCAGAGUCAGCACCACGCCAGGCUCGGCUACAGAGGCAGAAGUGCACGCUGACCUCAGGUCGUGUAUCCCGGGCUUCGGGCUCAGGCGGAGAGGGUAUGGACAACAGCGCCGAGGUGGCGUGGCCACAAUUCCAUGGCAGGGAGUCACACAAUGACGGCGGCGGCAUGAGCGUAGAUCUGAGGCUUCGGGCUCGGGCAGAGAGGAUGUUGACGACGGCGACAAAAGUGGCAGGGGUGUGGGGAUUGCCGGCUUGCCGCGGAGGAUCCGAGGAGGCGCGGAUCGAGGACUUGCUAUAGAGGAUUGAGGAGCACGGGGUAUAGGGAGAAGGCGGCGGUGGAGGCAUCCGACGGCGAUCUGCCUCUCACACCCGCGGCGCGAGUACGCGAGGAGGCGAGGUAGGGCGAGCGGUAGAGAGGGAGAAGGCGGCGACAGCGGUAGAGGUGGCCGACGGCGACCUCGUCUCUCCGGCCUCUCACGCCCGCGGUGCGAGUACAGGGGAGGCGAGCGCGUGAGGAGGCGGCGGCGGAUUACGGCUCGUCGCACAUGAGGGAUGGGGCCGGCCGCGACGGAUGGUAGGAUCCAACGGCGGCGGAAUGGGACCUGCUCCGGCGGCGGACGGAGAAGAAGCGGCUCCGGCGAGGAUGCGGCGGCAGUAAUCCGGAGAGAGGAGGAUGCGUGGCGGCAGUAAUCCGGAGUGAGGAGGAGGAGCGCCGGCCGCAGCGUAUGGAGCUGGCCACGGCGGAUGGUAGGAUCCGGCGGCGGCGGAAGGGGACCUCGGAUACAGUACAGAGGAGCGAGGAGUGAGCGAGAGAGGAGGAGCGAUGUCUUCGCGCAAUCGCGCGUGGAUGGAGAGUAGUCUUCGCGACAGUAAAUCGGGCGGUAGUGAAAUCGUGUGUGCGGAUGGACGGUAGGAUUGAUCCGGAUGAUUUCACACGUAGGAUUGGAGACGUAGGAUUGGAGGGUGCAACUCCUCCUUUUUAUAUUAGUAUAGAUGAUUCCUUAUGCGUGUCCUUCGAUUUCGAAAUUUUCACCAGCCAUAAGCUGUAAGGCAUUUACAUUUAAUUUAAUUAAACAGCUAAUUACUUGGUUUUUAUAUAUACCUAAUAAAAAAAUACGCAAAGCUUUAUGUUUAUUUUUGUCUGUUCGGUUUUUUUAUGGCGCCGGUAUUUUUUCCUAUCAUUUUUUUACACGCGAAAGAGUUUCUUUUGUGCGCACGCUCUAAAGCUUUUUAUUGGAAUUUAAUUUUAUUUUAAUGAUAAUUUUUAGUAAUUAUGUGUGGUUUUUGGGUGUUUUCUGUUUUUAGAUCCGAUCCGAUUUGUUGAACCCCGCGCCUUCCACGGGCCGAACCCUAGUGCCGCACCGCCGUCAUGUCAAUCGUGCAUUUCCUCCUCCAAUUGAUUAUAAAAAUCGAUUCCCCAUUCGUCCCUCAUCAUUUUCUAAAUGAUUUCCCCUUUCGAUUCAGUUUUAAUUCACUGGAUUUAAUCUUCAUUUUAACAGUCGCGAUGAUGAUCGAUGGGCGAUCUUCCUCGAUCGUUUUUAUCUCAAGUUUUACACUCUGAUUUUGGGAAGAACGGAAAGAGGAUAUCGAAGGGAUCAAAAGCCCUCAACCAAUUUUUGGAGAUCGAGAAAUGUUCGACCGGAUUUGAUGGGGAAGAUCUGCUUUGGCAUCAUACGGGCAUGGGACCAUGUUCGAGAGGUUGAAGACGGUUGUCGGCUGUGCAAGUUGGACCUGCAACUCCACUUGUGAGAUGGGCGGAAGGGAGGCAGGCCGAGCAAAGGGAGGUAAAGGUUUGGCUUAGGGCUGAAAAGGAAACAUUGAAUGGGUUUUCGGUCCAAAACCAAGGAUGAAUUCUUAUUAACUUUUUUAAUUGUAAUGUAUAGCAAUCCCAGUUUUAGGAUUUUUAUUAAAUGUUUCAAUUCUAAUGUAUAUUGAUCCCAAUAUUUCAAUUUAUUGCUC
Sequence
(OSA-LNCN0183.2):
UGUCCUUCGAUUUCGAAAUUUUCACCAGCCAUAAGCUGUAAGGCAUUUACAUUUAAUUUAAUUAAACAGCUAAUUACUUGGUUUUUAUAUAUACCUAAUAAAAAAAUACGCAAAGCUUUAUGUUUAUUUUUGUCUGUUCGGUUUUUUUAUGGCGCCGGUAUUUUUUCCUAUCAUUUUUUUACACGCGAAAGAGUUUCUUUUGUGCGCACGCUCUAAAGCUUUUUAUUGGAAUUUAAUUUUAUUUUAAUGAUAAUUUUUAGUAAUUAUGUGUGGUUUUUGGGUGUUUUCUGUUUUUAGAUCCGAUCCGAUUUGUUGAACCCCGCGCCUUCCACGGGCCGAACCCUAGUGCCGCACCGCCGUCAUGUCAAUCUCGCGAUGAUGAUCGAUGGGCGAUCUUCCUCGAUCGUUUUUAUCUCAAGUUUUACACUCUGAUUUUGGGAAGAACGGAAAGAGGAUAUCGAAGGGAUCAAAAGCCCUCAACCAAUUUUUGGAGAUCGAGAAAUGUUCGACCGGAUUUGAUGGGGAAGAUCUGCUUUGGCAUCAUACGGGCAUGGGACCAUGUUCGAGAGGUUGAAGACGGUUGUCGGCUGUGCAAGUUGGACCUGCAACUCCACUUGUGAGAUGGGCGGAAGGGAGGCAGGCCGAGCAAAGGGAGGUAAAGGUUUGGCUUAGGGCUGAAAAGGAAACAUUGAAUGGGUUUUCGGUCCAAAACCAAGGAUGAAUUCUUAUUAACUUUUUUAAUUGUAAUGUAUAGCAAUC
Sequence
(OSA-LNCN0183.3):
GCGGCGGCGGAUUACGGCUCGUCGCACAUGAGGGAUGGGGCCGGCCGCGACGGAUGGUAGGAUCCAACGGCGGCGGAAUGGGACCUGCUCCGGCGGCGGACGGAGAAGAAGCGGCUCCGAGGAGGAUGCGUGGCGGCAGUAAUCCGGAGUGAGGAGGAGGAGCGCCGGCCGCAGCGUAUGGAGCUGGCCACGGCGGAUGGUAGGAUCCGGCGGCGGCGGAAGGGGACCUCGGAUACAGUACAGAGGAGCGAGGAGUGAGCGAGAGAGGAGGAGCGAUGUCUUCGCGCAAUCGCGCGUGGAUGGAGAGUAGUCUUCGCGACAGUAAAUCGGGCGGUAGUGAAAUCGUGUGUGCGGAUGGACGGUAGGAUUGAUCCGGAUGAUUUCACACGUAGGAUUGGAGACGUAGGAUUGGAGGGUGCAACUCCUCCUUUUUAUAUUAGUAUAGAUGAUUCCUUAUGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
66.67%
HE_num:
HEP:
32.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.63
Avg Expression:
11.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.63747870440718 | 1.16655689040331e-06 |