OSA-LNCN0183


Function Link


Basic Info

Chr:

Chr1

Start:

8626710

End:

8629173

Strand:

-

Ref_name:

OSA-LNCN0183

Sequence
(OSA-LNCN0183.1):

CAUCAAAAGAACCACUUACUCCAUGUACAGACAAAAUAGAGAGCAUUUGAUAUUUAUUUGAUGUAUUCUUCCAUAGCUGGCCAAAACAUGUCCAGCUGGAUACUAUAUUACAAAGCAAAAUAACAACGUGGAAUAUCACCAACAUGAUUUGAACCCCAAGGAGUUCGAAACCAAUACCAAUCUGUCCUUGGGAAUGCUCCCAAUCAUCACGAUGUGGUCGAUCCACAUUCCAGCCUGCAACUGCACCAAAACACAUAAACACAAGAAUGAGAGCAGAAACAUACAUCUUGAAUCAUGCCGGACCAAACCAAAACCAAAAGUAAAGAUUUCCAAUAGUUGUACAAAAUCAGUCGCACGGUGCAAAGAUACCGGCCGCAGGUUGCUGGCUGCUGGGUACCUGGCAUCGGGCACUGGACAGAGGCCGCAGCAAGAGGUCGAGCCAUCUACACUAGAUGUCUUCUCCCAGAGUCAGCACCACGCCAGGCUCGGCUACAGAGGCAGAAGUGCACGCUGACCUCAGGUCGUGUAUCCCGGGCUUCGGGCUCAGGCGGAGAGGGUAUGGACAACAGCGCCGAGGUGGCGUGGCCACAAUUCCAUGGCAGGGAGUCACACAAUGACGGCGGCGGCAUGAGCGUAGAUCUGAGGCUUCGGGCUCGGGCAGAGAGGAUGUUGACGACGGCGACAAAAGUGGCAGGGGUGUGGGGAUUGCCGGCUUGCCGCGGAGGAUCCGAGGAGGCGCGGAUCGAGGACUUGCUAUAGAGGAUUGAGGAGCACGGGGUAUAGGGAGAAGGCGGCGGUGGAGGCAUCCGACGGCGAUCUGCCUCUCACACCCGCGGCGCGAGUACGCGAGGAGGCGAGGUAGGGCGAGCGGUAGAGAGGGAGAAGGCGGCGACAGCGGUAGAGGUGGCCGACGGCGACCUCGUCUCUCCGGCCUCUCACGCCCGCGGUGCGAGUACAGGGGAGGCGAGCGCGUGAGGAGGCGGCGGCGGAUUACGGCUCGUCGCACAUGAGGGAUGGGGCCGGCCGCGACGGAUGGUAGGAUCCAACGGCGGCGGAAUGGGACCUGCUCCGGCGGCGGACGGAGAAGAAGCGGCUCCGGCGAGGAUGCGGCGGCAGUAAUCCGGAGAGAGGAGGAUGCGUGGCGGCAGUAAUCCGGAGUGAGGAGGAGGAGCGCCGGCCGCAGCGUAUGGAGCUGGCCACGGCGGAUGGUAGGAUCCGGCGGCGGCGGAAGGGGACCUCGGAUACAGUACAGAGGAGCGAGGAGUGAGCGAGAGAGGAGGAGCGAUGUCUUCGCGCAAUCGCGCGUGGAUGGAGAGUAGUCUUCGCGACAGUAAAUCGGGCGGUAGUGAAAUCGUGUGUGCGGAUGGACGGUAGGAUUGAUCCGGAUGAUUUCACACGUAGGAUUGGAGACGUAGGAUUGGAGGGUGCAACUCCUCCUUUUUAUAUUAGUAUAGAUGAUUCCUUAUGCGUGUCCUUCGAUUUCGAAAUUUUCACCAGCCAUAAGCUGUAAGGCAUUUACAUUUAAUUUAAUUAAACAGCUAAUUACUUGGUUUUUAUAUAUACCUAAUAAAAAAAUACGCAAAGCUUUAUGUUUAUUUUUGUCUGUUCGGUUUUUUUAUGGCGCCGGUAUUUUUUCCUAUCAUUUUUUUACACGCGAAAGAGUUUCUUUUGUGCGCACGCUCUAAAGCUUUUUAUUGGAAUUUAAUUUUAUUUUAAUGAUAAUUUUUAGUAAUUAUGUGUGGUUUUUGGGUGUUUUCUGUUUUUAGAUCCGAUCCGAUUUGUUGAACCCCGCGCCUUCCACGGGCCGAACCCUAGUGCCGCACCGCCGUCAUGUCAAUCGUGCAUUUCCUCCUCCAAUUGAUUAUAAAAAUCGAUUCCCCAUUCGUCCCUCAUCAUUUUCUAAAUGAUUUCCCCUUUCGAUUCAGUUUUAAUUCACUGGAUUUAAUCUUCAUUUUAACAGUCGCGAUGAUGAUCGAUGGGCGAUCUUCCUCGAUCGUUUUUAUCUCAAGUUUUACACUCUGAUUUUGGGAAGAACGGAAAGAGGAUAUCGAAGGGAUCAAAAGCCCUCAACCAAUUUUUGGAGAUCGAGAAAUGUUCGACCGGAUUUGAUGGGGAAGAUCUGCUUUGGCAUCAUACGGGCAUGGGACCAUGUUCGAGAGGUUGAAGACGGUUGUCGGCUGUGCAAGUUGGACCUGCAACUCCACUUGUGAGAUGGGCGGAAGGGAGGCAGGCCGAGCAAAGGGAGGUAAAGGUUUGGCUUAGGGCUGAAAAGGAAACAUUGAAUGGGUUUUCGGUCCAAAACCAAGGAUGAAUUCUUAUUAACUUUUUUAAUUGUAAUGUAUAGCAAUCCCAGUUUUAGGAUUUUUAUUAAAUGUUUCAAUUCUAAUGUAUAUUGAUCCCAAUAUUUCAAUUUAUUGCUC

Sequence
(OSA-LNCN0183.2):

UGUCCUUCGAUUUCGAAAUUUUCACCAGCCAUAAGCUGUAAGGCAUUUACAUUUAAUUUAAUUAAACAGCUAAUUACUUGGUUUUUAUAUAUACCUAAUAAAAAAAUACGCAAAGCUUUAUGUUUAUUUUUGUCUGUUCGGUUUUUUUAUGGCGCCGGUAUUUUUUCCUAUCAUUUUUUUACACGCGAAAGAGUUUCUUUUGUGCGCACGCUCUAAAGCUUUUUAUUGGAAUUUAAUUUUAUUUUAAUGAUAAUUUUUAGUAAUUAUGUGUGGUUUUUGGGUGUUUUCUGUUUUUAGAUCCGAUCCGAUUUGUUGAACCCCGCGCCUUCCACGGGCCGAACCCUAGUGCCGCACCGCCGUCAUGUCAAUCUCGCGAUGAUGAUCGAUGGGCGAUCUUCCUCGAUCGUUUUUAUCUCAAGUUUUACACUCUGAUUUUGGGAAGAACGGAAAGAGGAUAUCGAAGGGAUCAAAAGCCCUCAACCAAUUUUUGGAGAUCGAGAAAUGUUCGACCGGAUUUGAUGGGGAAGAUCUGCUUUGGCAUCAUACGGGCAUGGGACCAUGUUCGAGAGGUUGAAGACGGUUGUCGGCUGUGCAAGUUGGACCUGCAACUCCACUUGUGAGAUGGGCGGAAGGGAGGCAGGCCGAGCAAAGGGAGGUAAAGGUUUGGCUUAGGGCUGAAAAGGAAACAUUGAAUGGGUUUUCGGUCCAAAACCAAGGAUGAAUUCUUAUUAACUUUUUUAAUUGUAAUGUAUAGCAAUC

Sequence
(OSA-LNCN0183.3):

GCGGCGGCGGAUUACGGCUCGUCGCACAUGAGGGAUGGGGCCGGCCGCGACGGAUGGUAGGAUCCAACGGCGGCGGAAUGGGACCUGCUCCGGCGGCGGACGGAGAAGAAGCGGCUCCGAGGAGGAUGCGUGGCGGCAGUAAUCCGGAGUGAGGAGGAGGAGCGCCGGCCGCAGCGUAUGGAGCUGGCCACGGCGGAUGGUAGGAUCCGGCGGCGGCGGAAGGGGACCUCGGAUACAGUACAGAGGAGCGAGGAGUGAGCGAGAGAGGAGGAGCGAUGUCUUCGCGCAAUCGCGCGUGGAUGGAGAGUAGUCUUCGCGACAGUAAAUCGGGCGGUAGUGAAAUCGUGUGUGCGGAUGGACGGUAGGAUUGAUCCGGAUGAUUUCACACGUAGGAUUGGAGACGUAGGAUUGGAGGGUGCAACUCCUCCUUUUUAUAUUAGUAUAGAUGAUUCCUUAUGCG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

1

LEP:

0.2%

ME_num:

328

MEP:

66.67%

HE_num:

162

HEP:

32.93%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.63

Avg Expression:

11.39

Tip: OSA-LNCN0183 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L81.637478704407181.16655689040331e-06