RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0178

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

8503905

End:

8505991

Strand:

+

Ref_name:

OSA-LNCN0178

Sequence
(OSA-LNCN0178.1):

CAGCAGGCCACAACGCUUUGGCUGCGCCACCUAGCUUCCUCCCCUCAACUCCGACUAUAGGCUGGACGUUGGCUUCAAUCCCCAUCACCACCGGCCUUCGCGGCGCAGCCUCCUCGAUGCCGAUGACAGUGCUGCCCAGCUUCCUUAGCACCACACAACCUUUUUCUCCUCCUUUCUGACUCCGGCGCCAAGCUCGCUGCCGUCAACCUCCAGCACGACAUCCACUCCACGCCGGACGCCAGCCUCAAUCCCAUCACCGUCGACCUCCACGCGCGGCCUCCUCGACGUCGCUGACUGCGCCGUCCAGUCUCCUCGAUGCCUCCUCCACAUGUUUUUCAAGUUCUUCAGCUCAUUGGCGAGAUGCCGACGUGCCGUGCGAUGCGGUGGUGCGAGAAUGGAGCAAACAACGUUCAUGAAGACCAAGCUCAACUGCAUGUGGAGUGCUGCGAGAAGUAGCCGAAUUGCAAGCAAGACAAGGUCAGUAUGAGCCGAGUGAAUCGGUCCUAGCUGUACAUGAGAUUUAGUUGUUGCUAGUGAUUAGCCGCAUAUGCUGCGAUUAGUGGUAAUCAUGUAUUGGGAUUUCUUGGCAAAUAAGUAGGAUUAGUUAGUUACUUAGUGCAUGGGCAUCCCACGUCUGUGUGCAUGGCGUGAGUUGUGGCUGAGUGGGUUUGGCCAUUGUAAUCUCUUUGUAUGUACUGAGUCUAUAUAAACAAGAAAACGAUGUGAGCUAGUGGCCACAUCAACCAAAAGCCUGUGUGUUUU

Sequence
(OSA-LNCN0178.2):

CAACGCUUUGGCUGCGCCACCUAGCUUCCUCCCCUCAACUCCGACUAUAGGCUGGACGUUGGCUUCAAUCCCCAUCACCACCGGCCUUCGCGGCGCAGCCUCCUCGAUGCCGAUGACAGUGCUGCCCAGCUUCCUUAGCACCACACAACCUUUUUCUCCUCCUUUCUGACUCCGGCGCCAAGCUCGCUGCCGUCAACCUCCAGCACGACAUCCACUCCACGCCGGACGCCAGCCUCAAUCCCAUCACCGUCGACCUCCACGCGCGGCCUCCUCGACGUCGCUGACUGCGCCGUCCAGUCUCCUCGAUGCCUCCUCCACAUGUUUUUCAAGUUCUUCAGAAAACCAAAAAAAGGGUCGGAGUGGAUUGAUUCUUCCCCGUGCUUUUCCCAUGGAAUUAACAGUGUAGGAAAUCUUCCUGCGAUUUUCCUUUGAUUGGUUUUUGUGGUCUGAAUGGUAGGAAAAGGAAAAAAAAAAUCUAUCAAUAGUAUUCCUUCAAAAAUCUCAUGAAACUAUUGUAAUCUGAAUGAGUCCAACGACAUAUAGCCGAUUGUUCAAAACCCUAUCAACAUCGGAUGGUAUCGGCAUCAGCUAGCAUUGCUAUAUCGGCUUAUUGGCCCAUCGACUAUUUGAUCUUCAAUUUAUGCAUCUUAUCAGUUGUAGGAUCAAAGUGACUUAAACAAAACAAGACUAAAACACUAAGUAAAGGACCUAAACAUUACAUAAAAAGCACCUAAAUAUGUGCGUCAUGAUUUAACUUGAAAUUAAAGACUUGAACAUGUCAAUUUAGAGUAUGUAUGGCCAAGAAGUGAACAUCCGAAGUU

Sequence
(OSA-LNCN0178.3):

UGGACGUUGGCUUCAAUCCCCAUCACCACCGGCCUUCGCGGCGCAGCCUCCUCGAUGCCGAUGACAGUGCUGCCCAGCUUCCUUAGCACCACACAACCUUUUUCUCCUCCUUUCUGACUCCGGCGCCAAGCUCGCUGCCGUCAACCUCCAGCACGACAUCCACUCCACGCCGGACGCCAGCCUCAAUCCCAUCACCGUCGACCUCCACGCGCGGCCUCCUCGACGUCGCUGACUGCGCCGUCCAGUCUCCUCGAUGCCUCCUCCACAUGUUUUUCAAGUUCUUCAGUUUGGCUCCAGCUCAUUGGCGAGAUGCCGACGUGCCGUGCGAUGCGGUGGUGCGAGAAUGGAGCAAACAACGUUCAUGAAGACCAAGCUCAACUGCAUGUGGAGUGCUGCGAGAAGUAGCCGAAUUGCAAGCAAGACAAGGUCAGUAUGAGCCGAGUGAAUCGGUCCUAGCUGUACAUGAGAUUUAGUUGUUGCUAGUGAUUAGCCGCAUAUGCUGCGAUUAGUGGUAAUCAUGUAUUGGGAUUUCUUGGCAAAUAAGUAGGAUUAGUUAGUUACUUAGUGCAUGGGCAUCCCACGUCUGUGUGCAUGGCGUGAGUUGUGGCUGAGUGGGUUUGGCCAUUGUAAUCUCUUUGUAUGUACUGAGUCUAUAUAAACAAGAAAACGAUGUGAGCUAGUGGCCACAUCAACCAAAAGCCUGUGUGUUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

387

LEP:

78.66%

ME_num:

95

MEP:

19.31%

HE_num:

9

HEP:

1.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.85

Avg Expression:

2.65

Tip: OSA-LNCN0178 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h7.79530957333360.0213621690402206
29311 // leaf // control--/--9311 // leaf // salt-1.756130510422770.0196961827704304