Chr:
Chr1
Start:
8305703
End:
8306583
Strand:
-
Ref_name:
OSA-LNCN0176
Sequence
(OSA-LNCN0176.1):
CUCUCCCCUCCUCUCUCCCUCCUCCUCCAACUCCACAUCGAUCAGCAGCAGCAGCAGCUUGCACACUCGAGCUUAGCUUAGCUUUUGCAAGAGAGAUCGAGCUAGAGAUGGAGAAGUCGAGCAAGAUGAUGGCGGUGGCGGCGGUGCUGGUGCUCGCGGUGGUCGGCGCGGCGGAGGCGAGGAACAUCAAGGCGCCGCCGACAAGCAGGCCAAGAAGCCAUGAGAGACCUCGCCGUCGCCGGCGGCGUCGCCGCUGCUGCGCGGGUAAUGUGCUCUAUGUAGCGCACGGCGUUGCAUGCAAUAUGGAUGGCUAUAUGACGCGCGCGCGUUAUAUCUUCAUAUGUGCAGUUAGCUUGCACUGUGUCUAGCUAGCGUUCUAUUAUGAGUAGUGUCUCUUCUAUCUCUUUUCUUUACAUGCAUUUGGAGGAGGAUUAUUCUAUCUGUUUGUUGGUUGGUUGUGUUUGUUUGUUUUAAUUAGGUCCCUUCUUAUAUUUUGUGUUUUAAUUAAGUUCGUGAUCAUGUAGUAGUACUACCACUGUUUCGAGCUCGAGGCAUGAAUAAUGCUAAAUGUGAUCAUUAUUGUGUUAUUGUAUGGUGAUGGCUAUAUAUAUUACUAUCUCUGCUUCAAAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.14%
ME_num:
MEP:
3.66%
HE_num:
HEP:
25.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.91
Avg Expression:
189.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.55791686915667 | 0.0049925792392398 |