Chr:
Chr1
Start:
7894807
End:
7901687
Strand:
-
Ref_name:
OSA-LNCN0173
Sequence
(OSA-LNCN0173.1):
GCUAGAACAACUUAUGCUCACGACAACACACUUUCGGCGCUUCACGGUAGUGUCAGAUCCAGUAGCGCGCACAGUCCACAACAGCACACAUGAAAAGCGGCAGCUCGAGUUGUCACUAUCAACUUUCGGCGCUGCCUGUUGACAUAAAGUGAAUCACGCCCACGCGUGAUCGUCUUGUCACAUCUAAUGAAUAAUGUAUCUCAUUGAGUUCACAUAUAUUGCAGUGAAAACGACGCUAUAUAAUUGACAAUCUGAAGGCAACCUCUUCAUAUCUUCUUUCCCACUAGCACACAACACACGAAAAUGGAAGCGCCAUUCCUUGAGCGUCUCAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.77%
ME_num:
MEP:
48.37%
HE_num:
HEP:
40.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.75
Avg Expression:
17.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.81855918943693 | 0.0125509415495509 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.98824307491827 | 0.000117929181717114 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.84859283190618 | 0.00555655040618166 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.84848883924941 | 0.00553992782410119 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.84844908683694 | 0.00557353677361011 |