Chr:
Chr1
Start:
7658305
End:
7658818
Strand:
.
Ref_name:
OSA-LNCN0168
Sequence
(OSA-LNCN0168.1):
CCCAGAGAAAGAGAACGGAAGAGAAUGUUAGAAAUUAAUCUUGUUGUUUCUUAAUUUCAGCAUGUUUAUCUAUAUGCAUAUGUGUGUUGCAUGGCCUGGACAGCUAGCUAUAUGUACGUGGGUGCUGCAUGGCUUAGUGAGUAGUGGUUGGCAGUGAGUAGUGAGCCAAUAAAGAGCCAGGAGAUGAGAGUACAUGUAUGUAGCUUAGUUAGUUAGCCAUGCAUAAUUGUGGGCUAGUGAUUAGCCGAGUCUUGCACAAGAUUAGGAGUAGGAAGUGGUCAGUUUGCAUGCAUGCAAGUUAGUUGGUUGGUUCAAGCAACGAACGUCGGCGAAGACUCAGUACUUGUGAAGUUGCGGCCAAGUAAACAGGACGUGGGCGUCGUGUGUGGCUUGAGAAGCGGAACAACCAGCUUCGUGUGUGUAUGUACUGUGUUAUAAAUAACUGCUCAUUGUAAUCAUUUAGUAAAGAGAAAAAAACCAGUGAAAAGGGCACAAGUUGUUUUGGUGCCGCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.72%
ME_num:
MEP:
28.25%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
2.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.00739800466384 | 0.00270526857377396 |