Chr:
Chr1
Start:
7260068
End:
7260931
Strand:
+
Ref_name:
OSA-LNCN0162
Sequence
(OSA-LNCN0162.1):
GUACUCUCCGCCGCCGCCGCAGCCACAGCCGUUCGCCUCGCCGCCCUUCCACGGCUCGUCGGAGCAGCAGAGGCAGCCGCAGUACUACUCCUGGAUGAGCUCCAGCUACGACGGCUACUCCGGCGGCCGGAGCAGCGCCGGGAGCUCGUCGGAGGAGCUGGAUUUGGAGCUGAGAUUGUAGUAGCUGAUGGAUUAACCUAUAGUUUAUUACAGCAAUUUUUUGUUAGUUUCUGAUUAAUUAAAGAAUGUUGUGCAUGGGCGAAGCAUCAUGCAUGGAUGGAUGGGGAGCUUAAUCAUGCACAGUAGUAACCAAGAAUUACUAGCUACUCUUACUAGAUUAGAGCAUCUCCAACAUCCUCUCCAAAUCAACUCUCCAAACACCCAUAUAGCCAACUCUUCAUCUAAUUUGGCUAGUCCAACAAGUUGUUUAUUUCAACAGCCUCUCUAUCUACCAUCUCUAUUACAAAUAGGACCCAUAUAUCAGUCUCUACCACCCUUCUUCCUCCUCUUCCAACCCAUUUUUCUUCCUCCUACUAGACUACUGCAUCCACCCCACACCAUCUCCUCCAAUGCGGCGAAGGUGGACGGCGGGCACGCGAGGCGACGACGGGCAGGCGGAGAACAGCGAGCGGCGGCGGCGGCGCCGAGCCUCGCCACGCGGAGGCCGGCGGCCGCGGCGAGCCGAGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.43%
ME_num:
MEP:
8.33%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.95
Avg Expression:
11.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.60006381393519 | 0.000143352320458045 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.51721492245975 | 0.000156206948281429 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.75400992179036 | 5.82275516229913e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.68171490691169 | 2.55765046459574e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.27386098994735 | 0.000919291940269356 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.09501967804412 | 1.34413466134788e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 7.64072128787515 | 1.41404693024656e-09 |
| 8 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.79668250354908 | 0.00951457358048807 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.64101486351902 | 0.00550865407055579 |
| 10 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.88359476276176 | 0.0406209726072498 |
| 11 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -2.02342715454945 | 0.0101228710777174 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 9.45046771848214 | 7.0495212314793e-15 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.13461914068048 | 3.97392797828209e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 8.56601272516421 | 6.48634550639341e-12 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 8.06137489568826 | 7.30665015474292e-11 |