Chr:
Chr1
Start:
7230508
End:
7231106
Strand:
.
Ref_name:
OSA-LNCN0161
Sequence
(OSA-LNCN0161.1):
GGUGUUAGUUGUAGAGCAAAAGGACAUUUAUAUCCUUGGUGGUUAUUGUAAUUUUUGCUCCUAUUUUUUUCAGCUGGUGUGAUUUUGCCCCCAUUGUAUGAUUUUAGCUUGUGUGAUUAACAGAACAGCAAGCAUUACAAAGUGUCCCCAUACAAAUAUAGUACAUUAGCUACUUUCUCAAUAAACGUCAAUUAUCAAAUACAUAUUGUUGGGUCUAUGUACUCCAUUCAAGUGAUGCUAAUAUAGUUAAUUGGAGGAGUUAGGAAGGAAAUGGUAGUUACUAGUUCGCAUCCAGCCACCACCUACCUCGUCGCAUCCUGUGGCCGUCGCCUGCCUCGUCGCCUGCCGCACCUGGGAGUGGCCGCCACCGCGUGGAAGCCUGGGAAAGGCAUCACGUGAAUGGCUCGCCGGCUGGCUACCCACUGGCCGCGGCGCCUAGCUACCGCCGGCCCGCCCUCGCCGCGGCGGCCGCCGCCGGGCGCACACCCUCGCUGCGGCUGCCGCCAUAGCGCGCACGCCCUCGCCGCGUACGCCGCCGCCGGGCGCCCUCGCCGACCCCCGCCCUCGCCGCGUCCCCUUUCGAUUUCGAUUCAUGCACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
52.64%
HE_num:
HEP:
14.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.76
Avg Expression:
7.08
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.51585925817221 | 0.00227766367255563 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.5604034017658 | 0.0371875120661563 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.99674875391493 | 0.000245173999415228 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.41765785531071 | 0.000103468353516037 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.53276709612733 | 0.0490691837180644 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -4.59187503542629 | 0.0137692133350221 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.14500661090313 | 0.0333631424253216 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.67998288354274 | 0.0115436778671373 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 1.95012606011551 | 9.73428458904115e-06 |
| 10 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 1.16480828676232 | 0.0350235849424661 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.9145843164197 | 0.00904126104295306 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.60989171311936 | 0.00904575563040551 |